Ss1.1-reep31c_n13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGCGGCGTTGGGGGCGGCCTTCTGGAGAACGCGAACCCCCACATTTACGAGCGCT CTGGGGAGCGGCCGGTGACCGCGGGCGAGGAAGACGAGCAGGTTCCAGACAGCATCGATG CGCGCGAGATCTTCGATATCCGCCCGATGGTGGGCGGCGGCGGCGGCGGCGTTGGGGGCG GCCTTCTGGAGAACGCGAACCCCCTCATTTACGAGCGCTCTGGGGAGCGGCCGGTGACCG CGGGCGAGGAAGACGAGCAGGTTCCAGACAGCATCGATGCGCGCGAGATCTTCGATCTGA TTCGCTCCATCAATGACCCGGAGCATCCACTGACGCTGGAAGAATTGAACGTAGTAGAGC AAGTCCGGGTTCAGGTAAGCGACCCTGAGAGCACAGTGGCTGTGGCTTTCACACCCACCA TTCCGCATTGCAGTATGGCCACCCTTATTGGCCTGTCCATCAAAGTCAAGCTTCTGCGAT CCCTTCCTCAGCGTTTTAAGATGGACGTGCACATTACGCCAGGGACCCATGCCTCTGAGC ATGCAGTGAACAAGCAGCTCGCAGATAAAGAGCGGGTGGCAGCTGCCCTAGAGAACACCC ACCTGCTGGAGGTTGTGAACCAGTGTCTGTCAGCTCGCTCCTGAACCTGGATTTTTGCTC CCAGTCCCATTCAGGACTCATGGCCTTGTTTTCTTGAAATCACTGACAATAAGAAACTAA CATTTTGCATTTTGTAATAAACCCTTATTTATATTCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGCGGCGTTGGGGGCGGCCTTCTGGAGAACGCGAACCCCCACATTTACGAGCGCT CTGGGGAGCGGCCGGTGACCGCGGGCGAGGAAGACGAGCAGGTTCCAGACAGCATCGATG CGCGCGAGATCTTCGATATCCGCCCGATGGTGGGCGGCGGCGGCGGCGGCGTTGGGGGCG GCCTTCTGGAGAACGCGAACCCCCTCATTTACGAGCGCTCTGGGGAGCGGCCGGTGACCG CGGGCGAGGAAGACGAGCAGGTTCCAGACAGCATCGATGCGCGCGAGATCTTCGATCTGA TTCGCTCCATCAATGACCCGGAGCATCCACTGACGCTGGAAGAATTGAACGTAGTAGAGC AAGTCCGGGTTCAGGTAAGCGACCCTGAGAGCACAGTGGCTGTGGCTTTCACACCCACCA TTCCGCATTGCAGTATGGCCACCCTTATTGGCCTGTCCATCAAAGTCAAGCTTCTGCGAT CCCTTCCTCAGCGTTTTAAGATGGACGTGCACATTACGCCAGGGACCCATGCCTCTGAGC ATGCAGTGAACAAGCAGCTCGCAGATAAAGAGCGGGTGGCAGCTGCCCTAGAGAACACCC ACCTGCTGGAGGTTGTGAACCAGTGTCTGTCAGCTCGCTCCTGAACCTGGATTTTTGCTC CCAGTCCCATTCAGGACTCATGGCCTTGTTTTCTTGAAATCACTGACAATAAGAAACTAA CATTTTGCATTTTGTAATAAACCCTTATTTATATTCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-169, gnl|bosTau2|chr18 (28184566-28184400) | |
| 1-169, gnl|Hg17|chr16 (65525761-65525604) | |
| 1-169, gnl|Mm7|chr8 (103240986-103240824) | |
| 249-764, gnl|bosTau2|chr6 (46820402-46819912) | |
| 249-764, gnl|Hg17|chr16 (65525470-65523471) | |
| 249-764, gnl|Mm7|chr7 (39235045-39235590) | |
| 373-503, gnl|bosTau2|chr18 (28183932-28183802) | |
| 373-503, gnl|canFam2|chr5 (85393064-85392966) | |
| 373-503, gnl|danRer3|chr7 (36476885-36476974) | |
| 373-503, gnl|echTel1|scaffold_111737 (1272-1366) | |
| 373-503, gnl|galGal2|chr11 (11492919-11492821) | |
| 373-503, gnl|hg17|chr16 (65525008-65525106) | |
| 373-503, gnl|Hg17|chr16 (65525145-65525015) | |
| 373-503, gnl|mm7|chr8 (103240261-103240359) | |
| 373-503, gnl|Mm7|chr8 (103240398-103240268) | |
| 373-503, gnl|monDom2|scaffold_23 (20446744-20446646) | |
| 373-503, gnl|oryCun1|scaffold_211458 (133064-133162) | |
| 373-503, gnl|panTro1|chr18 (59763337-59763435) | |
| 373-503, gnl|rheMac2|chr20 (65224145-65224243) | |
| 373-503, gnl|rn3|chr19 (263211-263113) | |
| 373-503, gnl|tetNig1|chr17 (9736869-9736958) | |
| 373-503, gnl|xenTro1|scaffold_215 (798002-797909) | |
| 545-757, gnl|bosTau2|chr18 (28182928-28182716) | |
| 545-757, gnl|Hg17|chr16 (65523706-65523469) | |
| 545-757, gnl|Mm7|chr8 (103239391-103239151) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-169, gnl|bosTau2|chr18 (28184566-28184400) | |
| 1-169, gnl|Hg17|chr16 (65525761-65525604) | |
| 1-169, gnl|Mm7|chr8 (103240986-103240824) | |
| 249-764, gnl|bosTau2|chr6 (46820402-46819912) | |
| 249-764, gnl|Hg17|chr16 (65525470-65523471) | |
| 249-764, gnl|Mm7|chr7 (39235045-39235590) | |
| 373-503, gnl|bosTau2|chr18 (28183932-28183802) | |
| 373-503, gnl|canFam2|chr5 (85393064-85392966) | |
| 373-503, gnl|danRer3|chr7 (36476885-36476974) | |
| 373-503, gnl|echTel1|scaffold_111737 (1272-1366) | |
| 373-503, gnl|galGal2|chr11 (11492919-11492821) | |
| 373-503, gnl|hg17|chr16 (65525008-65525106) | |
| 373-503, gnl|Hg17|chr16 (65525145-65525015) | |
| 373-503, gnl|mm7|chr8 (103240261-103240359) | |
| 373-503, gnl|Mm7|chr8 (103240398-103240268) | |
| 373-503, gnl|monDom2|scaffold_23 (20446744-20446646) | |
| 373-503, gnl|oryCun1|scaffold_211458 (133064-133162) | |
| 373-503, gnl|panTro1|chr18 (59763337-59763435) | |
| 373-503, gnl|rheMac2|chr20 (65224145-65224243) | |
| 373-503, gnl|rn3|chr19 (263211-263113) | |
| 373-503, gnl|tetNig1|chr17 (9736869-9736958) | |
| 373-503, gnl|xenTro1|scaffold_215 (798002-797909) | |
| 545-757, gnl|bosTau2|chr18 (28182928-28182716) | |
| 545-757, gnl|Hg17|chr16 (65523706-65523469) | |
| 545-757, gnl|Mm7|chr8 (103239391-103239151) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| ebs (0.473205) | |
| mas (0.42061) | |
| amn (0.417711) | |
| elu (0.385356) | |
| ecc (0.345105) | |
| cje (0.330469) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| mas (0.42061) | |
| amn (0.417711) | |
| elu (0.385356) | |
| ecc (0.345105) | |
| cje (0.330469) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |