Non-Coding RNA Search

Ss1.1-reep32c_b19.5

Sequence:


               
               ACATTACACGGGGGACAAAGCAAGTCCAGATCAGAATGTTTCAACTCATACACCTCAGTC
TTCAGTGAAGACTTCAGTGCCTAGCAGCAAGTCATCTGGTGACCTTGTCGATCTGTTTGA
TGGTACTAGCCAGTCAACAGTAACACCAACAAGTGGGAACGGAGACTTTGGTGACTGGAG
TGCCTTCAACCAAGCCCCATCAGGCCCTGTTGCTGCCAGTGGCGAGCTCTTTGGCAGTGC
CTCACAGCCAGTTAGAACTTGTCACAGTGGCTCACAACCAGCTCTAGGCCCACCTCCAGG
TTCCTCAAATTCTTCAGAACTATTTGATCTTATGGGCTCATCCCAGGCAACCATGACATC
TTTCCCAGAGTATGAATTTCTCTATGATGAGCACTAATACTGTAGGGCTGGGTTTGCCCA
TGTCAAGATCACAGAATACAGATATGGTCCAGAAATCAGTCAGCAAAACCCTGCCCTCTA
CTTGGTCTGATCCCAGTGTAAACATCAGCCTAGACAACTTACTACCTGGTATGCAGCCTT
CCAAACCCCAGCAGCCATCACTCAATACAATGATTCAGCAACAGAATATGCAACAGCCTA
TGAATGTGATGACCCAAAGTTTTGGAGCTGTAAACCTCAATTCTCCATCAAACATGCTTC
CTGTCCGGCCCCAAACTAACCCTTTGATGGGGGGACCCATGCCTATGAGCATGCCCACTG
TAATGACTGGCACCATGGGAATGGCCCCTCTTGGAAATAGTCCGATGATGAACCAGAGCA
TGATGGGCATGAACATGAACATAGGGATGTCAGCTGCTGGGATGGGCCTGACAGGCACAG
TGGGAATGGGCATGCCCAACTTAGCCATGACTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTACACGGGGGACAAAGCAAGTCCAGATCAGAATGTTTCAACTCATACACCTCAGTC
TTCAGTGAAGACTTCAGTGCCTAGCAGCAAGTCATCTGGTGACCTTGTCGATCTGTTTGA
TGGTACTAGCCAGTCAACAGTAACACCAACAAGTGGGAACGGAGACTTTGGTGACTGGAG
TGCCTTCAACCAAGCCCCATCAGGCCCTGTTGCTGCCAGTGGCGAGCTCTTTGGCAGTGC
CTCACAGCCAGTTAGAACTTGTCACAGTGGCTCACAACCAGCTCTAGGCCCACCTCCAGG
TTCCTCAAATTCTTCAGAACTATTTGATCTTATGGGCTCATCCCAGGCAACCATGACATC
TTTCCCAGAGTATGAATTTCTCTATGATGAGCACTAATACTGTAGGGCTGGGTTTGCCCA
TGTCAAGATCACAGAATACAGATATGGTCCAGAAATCAGTCAGCAAAACCCTGCCCTCTA
CTTGGTCTGATCCCAGTGTAAACATCAGCCTAGACAACTTACTACCTGGTATGCAGCCTT
CCAAACCCCAGCAGCCATCACTCAATACAATGATTCAGCAACAGAATATGCAACAGCCTA
TGAATGTGATGACCCAAAGTTTTGGAGCTGTAAACCTCAATTCTCCATCAAACATGCTTC
CTGTCCGGCCCCAAACTAACCCTTTGATGGGGGGACCCATGCCTATGAGCATGCCCACTG
TAATGACTGGCACCATGGGAATGGCCCCTCTTGGAAATAGTCCGATGATGAACCAGAGCA
TGATGGGCATGAACATGAACATAGGGATGTCAGCTGCTGGGATGGGCCTGACAGGCACAG
TGGGAATGGGCATGCCCAACTTAGCCATGACTTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6Q387_MESAU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Q387_MESAU

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-434, - strand, RNAz p=0.940105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-434, - strand, RNAz p=0.940105

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               208-278, + strand, RNAmicro p=0.977029
               

               
               155-312, - strand, RNAmicro p=0.934282

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               208-278, + strand, RNAmicro p=0.977029
               

               
               155-312, - strand, RNAmicro p=0.934282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-434, gnl|bosTau2|chr7 (47036186-47036481)
               

               
               138-434, gnl|Hg17|chr5 (157151584-157151289)
               

               
               138-434, gnl|Mm7|chr11 (45862925-45863220)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-434, gnl|bosTau2|chr7 (47036186-47036481)
               

               
               138-434, gnl|Hg17|chr5 (157151584-157151289)
               

               
               138-434, gnl|Mm7|chr11 (45862925-45863220)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eep (0.122564)

	208-278, + strand, RNAmicro p=0.977029
	155-312, - strand, RNAmicro p=0.934282

	138-434, gnl\|bosTau2\|chr7 (47036186-47036481)
	138-434, gnl\|Hg17\|chr5 (157151584-157151289)
	138-434, gnl\|Mm7\|chr11 (45862925-45863220)