Non-Coding RNA Search

Ss1.1-reep32c_o11.5

Sequence:


               
               GAAAGAGCAGAAGTTCTGATAGATGACAGAGAGTGGTAACTGAGATGAGAGTCTAACAGT
GGGGACAGATGAAGCTAGACTTAGAAAATATTTAGTATATAGAAAGGGGATTTAAAAACA
AAAACAAAAACATGACCAGATGGGGATGGGGACATGGTTTGGAGAAGACAAGGAAAATTC
AGGCTTTATTCCCAGATCCCTGCCCTGAGCAACAAATGATGTAATTTCCTGCAACAGGGT
TCCTTGGCGAGTAGATTTGGGCGTAGAATAACAAGTTGAGTCTAGATATGTTGCGTTTGA
GAGACTCATAGGACATCTAAGAAGAGACGTCCACAGGACTGGCTTAATACATTGGCCTGA
GGATGGAGATTTAGATTTGAGCCCTGTCTACACGCAGATGGCAACTGAGGCTTGGGGATA
AATGACATCACCAAGAGCAGTAGGTATCTGTCTGTTCATGTGAATTTGATAGCCAAAGCC
CTTGGCAATATCTGATACAAAAGCGTGCCTGAGGCGTTCTCCTGTGGTCCAGTGGGTTAA
GGATCCAGTATCGTCACTGCAGTGGCCCGAGTCACTGCTGTGGCATGGGTTCAACCCCTG
GCTCAGGAACTTCTGCGTGCTGCAGTGCGGCCAAACAACAACAGCAGCAGTAACAACAAC
AACAAATCATGCCTGAATTATACAACAGGGTTTTGACTGTCTTGATTATACTGTGATGTG
ATCTCAAATCTTTGGATATTGAATGGAAAGGAAGATTGTGACTTAGGCTCCATGAGCCAG
GCACTATTATAAATGCCAGTAACACCAAGGCTGTTTATTTTTTGCACTAGAGGAGCTTAC
ACTGTCATGGGAGAAGACAGACACGTAAGTAGTTAAAATTACAGAAACTATAAAGCTAAT
ATTACTAAAATCACTTGGTATAAGGCCAGCGCTGAGCTAACCATTTTCTTGGCTTAACTC
GTTGAATTCTCTCAGCAATCTATTTAGTAGGTTGCTATCATCTCTTTTTTATGGAGGAGG
AAACGGAAGCTTAAGGTGTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGCAGAAGTTCTGATAGATGACAGAGAGTGGTAACTGAGATGAGAGTCTAACAGT
GGGGACAGATGAAGCTAGACTTAGAAAATATTTAGTATATAGAAAGGGGATTTAAAAACA
AAAACAAAAACATGACCAGATGGGGATGGGGACATGGTTTGGAGAAGACAAGGAAAATTC
AGGCTTTATTCCCAGATCCCTGCCCTGAGCAACAAATGATGTAATTTCCTGCAACAGGGT
TCCTTGGCGAGTAGATTTGGGCGTAGAATAACAAGTTGAGTCTAGATATGTTGCGTTTGA
GAGACTCATAGGACATCTAAGAAGAGACGTCCACAGGACTGGCTTAATACATTGGCCTGA
GGATGGAGATTTAGATTTGAGCCCTGTCTACACGCAGATGGCAACTGAGGCTTGGGGATA
AATGACATCACCAAGAGCAGTAGGTATCTGTCTGTTCATGTGAATTTGATAGCCAAAGCC
CTTGGCAATATCTGATACAAAAGCGTGCCTGAGGCGTTCTCCTGTGGTCCAGTGGGTTAA
GGATCCAGTATCGTCACTGCAGTGGCCCGAGTCACTGCTGTGGCATGGGTTCAACCCCTG
GCTCAGGAACTTCTGCGTGCTGCAGTGCGGCCAAACAACAACAGCAGCAGTAACAACAAC
AACAAATCATGCCTGAATTATACAACAGGGTTTTGACTGTCTTGATTATACTGTGATGTG
ATCTCAAATCTTTGGATATTGAATGGAAAGGAAGATTGTGACTTAGGCTCCATGAGCCAG
GCACTATTATAAATGCCAGTAACACCAAGGCTGTTTATTTTTTGCACTAGAGGAGCTTAC
ACTGTCATGGGAGAAGACAGACACGTAAGTAGTTAAAATTACAGAAACTATAAAGCTAAT
ATTACTAAAATCACTTGGTATAAGGCCAGCGCTGAGCTAACCATTTTCTTGGCTTAACTC
GTTGAATTCTCTCAGCAATCTATTTAGTAGGTTGCTATCATCTCTTTTTTATGGAGGAGG
AAACGGAAGCTTAAGGTGTCTAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               95-206, - strand, RNAz p=0.759132
               

               
               397-513, - strand, RNAz p=0.986712

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-206, - strand, RNAz p=0.759132
               

               
               397-513, - strand, RNAz p=0.986712

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-321, gnl|bosTau2|chr23 (18954990-18954664)
               

               
               1-321, gnl|canFam2|chr12 (17840072-17840683)
               

               
               1-321, gnl|echTel1|scaffold_319837 (146373-145778)
               

               
               1-321, gnl|hg17|chr6 (46747908-46748447)
               

               
               1-321, gnl|Hg17|chr6 (46748135-46748446)
               

               
               1-321, gnl|mm7|chr17 (41766759-41766271)
               

               
               1-321, gnl|panTro1|chr5 (47497656-47498195)
               

               
               1-321, gnl|rheMac2|chr4 (46497838-46498341)
               

               
               1-321, gnl|rn3|chr9 (13021446-13021966)
               


               
               358-513, gnl|bosTau2|chr23 (18954316-18954160)
               

               
               358-513, gnl|canFam2|chr12 (17840684-17840878)
               

               
               358-513, gnl|echTel1|scaffold_319837 (145777-145380)
               

               
               358-513, gnl|hg17|chr6 (46748448-46748649)
               

               
               358-513, gnl|Hg17|chr6 (46748502-46748657)
               

               
               358-513, gnl|mm7|chr17 (41766270-41766096)
               

               
               358-513, gnl|panTro1|chr5 (47498196-47498397)
               

               
               358-513, gnl|rheMac2|chr4 (46498342-46498543)
               

               
               358-513, gnl|rn3|chr9 (13021967-13022140)
               


               
               664-1044, gnl|bosTau2|chr23 (18954173-18953787)
               

               
               664-1044, gnl|Hg17|chr6 (46748644-46749038)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-321, gnl|bosTau2|chr23 (18954990-18954664)
               

               
               1-321, gnl|canFam2|chr12 (17840072-17840683)
               

               
               1-321, gnl|echTel1|scaffold_319837 (146373-145778)
               

               
               1-321, gnl|hg17|chr6 (46747908-46748447)
               

               
               1-321, gnl|Hg17|chr6 (46748135-46748446)
               

               
               1-321, gnl|mm7|chr17 (41766759-41766271)
               

               
               1-321, gnl|panTro1|chr5 (47497656-47498195)
               

               
               1-321, gnl|rheMac2|chr4 (46497838-46498341)
               

               
               1-321, gnl|rn3|chr9 (13021446-13021966)
               


               
               358-513, gnl|bosTau2|chr23 (18954316-18954160)
               

               
               358-513, gnl|canFam2|chr12 (17840684-17840878)
               

               
               358-513, gnl|echTel1|scaffold_319837 (145777-145380)
               

               
               358-513, gnl|hg17|chr6 (46748448-46748649)
               

               
               358-513, gnl|Hg17|chr6 (46748502-46748657)
               

               
               358-513, gnl|mm7|chr17 (41766270-41766096)
               

               
               358-513, gnl|panTro1|chr5 (47498196-47498397)
               

               
               358-513, gnl|rheMac2|chr4 (46498342-46498543)
               

               
               358-513, gnl|rn3|chr9 (13021967-13022140)
               


               
               664-1044, gnl|bosTau2|chr23 (18954173-18953787)
               

               
               664-1044, gnl|Hg17|chr6 (46748644-46749038)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cje (0.165235)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	95-206, - strand, RNAz p=0.759132
	397-513, - strand, RNAz p=0.986712

	1-321, gnl\|bosTau2\|chr23 (18954990-18954664)
	1-321, gnl\|canFam2\|chr12 (17840072-17840683)
	1-321, gnl\|echTel1\|scaffold_319837 (146373-145778)
	1-321, gnl\|hg17\|chr6 (46747908-46748447)
	1-321, gnl\|Hg17\|chr6 (46748135-46748446)
	1-321, gnl\|mm7\|chr17 (41766759-41766271)
	1-321, gnl\|panTro1\|chr5 (47497656-47498195)
	1-321, gnl\|rheMac2\|chr4 (46497838-46498341)
	1-321, gnl\|rn3\|chr9 (13021446-13021966)

	358-513, gnl\|bosTau2\|chr23 (18954316-18954160)
	358-513, gnl\|canFam2\|chr12 (17840684-17840878)
	358-513, gnl\|echTel1\|scaffold_319837 (145777-145380)
	358-513, gnl\|hg17\|chr6 (46748448-46748649)
	358-513, gnl\|Hg17\|chr6 (46748502-46748657)
	358-513, gnl\|mm7\|chr17 (41766270-41766096)
	358-513, gnl\|panTro1\|chr5 (47498196-47498397)
	358-513, gnl\|rheMac2\|chr4 (46498342-46498543)
	358-513, gnl\|rn3\|chr9 (13021967-13022140)

	664-1044, gnl\|bosTau2\|chr23 (18954173-18953787)
	664-1044, gnl\|Hg17\|chr6 (46748644-46749038)