Non-Coding RNA Search

Ss1.1-reep33c_c6.5

Sequence:


               
               AGTNGCAAAAGGAAATTTTGTACGAATGAAGGCAAACTAGCTCCTACCTTGTGCTAGATT
TAGTATGTTATGTGGAAGTCAAGGCCAAAGTAGAAGTAAGAAAATACAGTTACTTCAATT
TTCGGCTTCATTTTGTGCCTAACTCCAGGCTTTTAGCAGAGCTCACCGTATTGGGCAAAA
TAAGAAGGTGATGATCTATCGGTTTGTGACTCGTGCATCAGTGGAGGAGCGCATCACCCA
GGTGGCGAAGAAGAAGATGATGCTGACACATCTAGTTGTTCGGCCTGGGCTGGGCTCTAA
GACTGGCTCCATGTCCAAACAGGAGCTTGATGACATCCTCAAGTTTGGTACCGAGGAATT
ATTCAAGGATGAAGCCACAGATGGAGGTGAGCTAGTCAGGAGCTCGTTTTGGTCTGGGGC
TTGGCCTCTCTAAAGGGTATCTTTCTCTGGTACCTATGGTCCTGAGACTCAGACCTTGGG
TCCTGTGGGACTTGCTTTCTCCACTGCAGCTGCTGAAGCTAACTGGGGGTGTGGACCCCT
GATTCTTTATAGGAGGAGACAACAAAGAGGGAGAAGACAGCAGTGTTATCCACTATGACG
ATAAGGCCATTGAACGACTGCTGGACCGGAACCAGGATGAGACAGAGGATACGGAATTGC
AGGGCATGAACGAATATTTGAGCTCTTTCAAAGTGGCCCAGTATGTGGTGCGAGAGGAAG
AAATGGGGGAGGGACAGGAAAAAAGAGGAAGAAGACAGGAATAGAAGGGCAAAACCAAGA
ACCTGGCATTTATAGAGCCCCCATTATGATCCAGAAAGCAGCAGCAAGAAGATTTGGCCC
GAAATCTGGGTAAAGGAAAAAGAATCCGTAAACAGGTCAACTACAATGATGGCTCCCAGG
AGGACCGAGATTGGCAGGACGACCAGTCCGACAACCAGTCCGATTATTCGGTGGCTTCAG
AGGAAGGTGATGAAGACTTTGACGAACGTTCAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTNGCAAAAGGAAATTTTGTACGAATGAAGGCAAACTAGCTCCTACCTTGTGCTAGATT
TAGTATGTTATGTGGAAGTCAAGGCCAAAGTAGAAGTAAGAAAATACAGTTACTTCAATT
TTCGGCTTCATTTTGTGCCTAACTCCAGGCTTTTAGCAGAGCTCACCGTATTGGGCAAAA
TAAGAAGGTGATGATCTATCGGTTTGTGACTCGTGCATCAGTGGAGGAGCGCATCACCCA
GGTGGCGAAGAAGAAGATGATGCTGACACATCTAGTTGTTCGGCCTGGGCTGGGCTCTAA
GACTGGCTCCATGTCCAAACAGGAGCTTGATGACATCCTCAAGTTTGGTACCGAGGAATT
ATTCAAGGATGAAGCCACAGATGGAGGTGAGCTAGTCAGGAGCTCGTTTTGGTCTGGGGC
TTGGCCTCTCTAAAGGGTATCTTTCTCTGGTACCTATGGTCCTGAGACTCAGACCTTGGG
TCCTGTGGGACTTGCTTTCTCCACTGCAGCTGCTGAAGCTAACTGGGGGTGTGGACCCCT
GATTCTTTATAGGAGGAGACAACAAAGAGGGAGAAGACAGCAGTGTTATCCACTATGACG
ATAAGGCCATTGAACGACTGCTGGACCGGAACCAGGATGAGACAGAGGATACGGAATTGC
AGGGCATGAACGAATATTTGAGCTCTTTCAAAGTGGCCCAGTATGTGGTGCGAGAGGAAG
AAATGGGGGAGGGACAGGAAAAAAGAGGAAGAAGACAGGAATAGAAGGGCAAAACCAAGA
ACCTGGCATTTATAGAGCCCCCATTATGATCCAGAAAGCAGCAGCAAGAAGATTTGGCCC
GAAATCTGGGTAAAGGAAAAAGAATCCGTAAACAGGTCAACTACAATGATGGCTCCCAGG
AGGACCGAGATTGGCAGGACGACCAGTCCGACAACCAGTCCGATTATTCGGTGGCTTCAG
AGGAAGGTGATGAAGACTTTGACGAACGTTCAGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-343, + strand, RNAz p=0.984945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-343, + strand, RNAz p=0.984945

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               205-298, - strand, RNAmicro p=0.915717

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               205-298, - strand, RNAmicro p=0.915717

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               201-343, BW980035 full-length enriched swine cDNA library, adult intestine 
(dbj|BW980035.1|), blast E-value=0, identity=100% 
               

               
               184-343, CJ009996 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009996.1|), blast E-value=0, identity=100% 
               

               
               184-342, UI-R-FJ0-cpz-j-12-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone 
(gb|CA512476.1|), blast E-value=0, identity=92.45% 
               

               
               184-342, AMGNNUC (gb|CB803899.1|), blast E-value=0, identity=92.45%
               

               
               184-342, AGENCOURT_31542807 NIH_MGC_270 Rattus norvegicus cDNA clone 
(gb|CV110931.1|), blast E-value=0, identity=92.45% 
               

               
               184-342, AGENCOURT_50209039 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|DN937227.1|), blast E-value=0, identity=92.45%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               201-343, BW980035 full-length enriched swine cDNA library, adult intestine 
(dbj|BW980035.1|), blast E-value=0, identity=100% 
               

               
               184-343, CJ009996 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009996.1|), blast E-value=0, identity=100% 
               

               
               184-342, UI-R-FJ0-cpz-j-12-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone 
(gb|CA512476.1|), blast E-value=0, identity=92.45% 
               

               
               184-342, AMGNNUC (gb|CB803899.1|), blast E-value=0, identity=92.45%
               

               
               184-342, AGENCOURT_31542807 NIH_MGC_270 Rattus norvegicus cDNA clone 
(gb|CV110931.1|), blast E-value=0, identity=92.45% 
               

               
               184-342, AGENCOURT_50209039 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone 
(gb|DN937227.1|), blast E-value=0, identity=92.45%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126012, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126012, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               145-372, gnl|bosTau2|chr16 (35008742-35008969)
               

               
               145-372, gnl|Hg17|chr1 (6123399-6123172)
               

               
               145-372, gnl|Mm7|chr4 (151365674-151365901)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-372, gnl|bosTau2|chr16 (35008742-35008969)
               

               
               145-372, gnl|Hg17|chr1 (6123399-6123172)
               

               
               145-372, gnl|Mm7|chr4 (151365674-151365901)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	201-343, BW980035 full-length enriched swine cDNA library, adult intestine (dbj\|BW980035.1\|), blast E-value=0, identity=100%
	184-343, CJ009996 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ009996.1\|), blast E-value=0, identity=100%
	184-342, UI-R-FJ0-cpz-j-12-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone (gb\|CA512476.1\|), blast E-value=0, identity=92.45%
	184-342, AMGNNUC (gb\|CB803899.1\|), blast E-value=0, identity=92.45%
	184-342, AGENCOURT_31542807 NIH_MGC_270 Rattus norvegicus cDNA clone (gb\|CV110931.1\|), blast E-value=0, identity=92.45%
	184-342, AGENCOURT_50209039 NCI_CGAP_Pr50 Rattus norvegicus cDNA clone (gb\|DN937227.1\|), blast E-value=0, identity=92.45%

	145-372, gnl\|bosTau2\|chr16 (35008742-35008969)
	145-372, gnl\|Hg17\|chr1 (6123399-6123172)
	145-372, gnl\|Mm7\|chr4 (151365674-151365901)