Non-Coding RNA Search

Ss1.1-reep33c_d15.5

Sequence:


               
               TGGGTTGGTTCCCTTCCTTGCTCCTGACTGTGGGACTGGCTCACACAGACCTCGAGTTTC
CTGTCTTTCGAGTGAACACGCCACCAGGAACACAGCGGGGAATTGCTTTTTTTGTAAATT
GGTTCAGGACAACAGCTGCATATATATCTTCAATATATATCCAAAGCCTTAGCAATGTAC
CTATCCTTTGATCCAGCGAATCAACTTCTTGAATTTGTTTAAGAGAAATAATTAAGAATG
CACACAATATTGATGACAGCTTTACTTAGAAGAATCAAAGTAGTGGAAGCCATCTAAATG
GAGAAATACAGGGTGGCAGGAGGGCCCCGGGCAGACTGGACATCCAAAGGCTGTGCGCTT
CCGGGCCTGGAATGCCCGTGATATATGATGATATATGATGGGTGTATGTGTACGCTTTCC
TTTCCACCCTCAGGTCCAGGATGGTCGCTGGCATCAGACCCTCTTCATCTTCCGGACCCA
GGACCCCCAGCAGCTGCCGATTGTCAGCGTGGACAACCTCCCTCCTGCCTCATCAGGGAA
GCAGTACCGCCTCGAAGTTGGACCTGCCTGCTTCCTCTGACCTCTGACCTCCTGTCTCCT
CTAGGCCTCGAAGGGGAGGGAAGAGGAGGAGGAGGCAAAAGGAGGGTCCCTAGGCGCAGG
TGGGCCTGGGAGATGCAGCTCACCTGCCCAAGGATCCCTGAGCAGGTCCCAGCTGGTGTC
TGCCCAGTCAAAGAGGCTGAGGGCTAACAGGGCGCGCGTGGTCCTGGGGAAACAACAGAT
CCCAGCTCAGCCGCCAAGACCAACCAAAGAGCCAGCCAGAGCTGGCTGGGCCTGCCACCC
ACCTGAGCCCCGCGGCCTGTCTCCCAGCTCTGTGGCCACCCCTTTCCCTCCCCAGCTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTTGGTTCCCTTCCTTGCTCCTGACTGTGGGACTGGCTCACACAGACCTCGAGTTTC
CTGTCTTTCGAGTGAACACGCCACCAGGAACACAGCGGGGAATTGCTTTTTTTGTAAATT
GGTTCAGGACAACAGCTGCATATATATCTTCAATATATATCCAAAGCCTTAGCAATGTAC
CTATCCTTTGATCCAGCGAATCAACTTCTTGAATTTGTTTAAGAGAAATAATTAAGAATG
CACACAATATTGATGACAGCTTTACTTAGAAGAATCAAAGTAGTGGAAGCCATCTAAATG
GAGAAATACAGGGTGGCAGGAGGGCCCCGGGCAGACTGGACATCCAAAGGCTGTGCGCTT
CCGGGCCTGGAATGCCCGTGATATATGATGATATATGATGGGTGTATGTGTACGCTTTCC
TTTCCACCCTCAGGTCCAGGATGGTCGCTGGCATCAGACCCTCTTCATCTTCCGGACCCA
GGACCCCCAGCAGCTGCCGATTGTCAGCGTGGACAACCTCCCTCCTGCCTCATCAGGGAA
GCAGTACCGCCTCGAAGTTGGACCTGCCTGCTTCCTCTGACCTCTGACCTCCTGTCTCCT
CTAGGCCTCGAAGGGGAGGGAAGAGGAGGAGGAGGCAAAAGGAGGGTCCCTAGGCGCAGG
TGGGCCTGGGAGATGCAGCTCACCTGCCCAAGGATCCCTGAGCAGGTCCCAGCTGGTGTC
TGCCCAGTCAAAGAGGCTGAGGGCTAACAGGGCGCGCGTGGTCCTGGGGAAACAACAGAT
CCCAGCTCAGCCGCCAAGACCAACCAAAGAGCCAGCCAGAGCTGGCTGGGCCTGCCACCC
ACCTGAGCCCCGCGGCCTGTCTCCCAGCTCTGTGGCCACCCCTTTCCCTCCCCAGCTTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958973|emb|CAI16858.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958973|emb|CAI16858.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               528-766, + strand, RNAz p=0.999479

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-766, + strand, RNAz p=0.999479

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK021957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK021957, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               123-312, gnl|bosTau2|chr8 (57523668-57523871)
               


               
               371-899, gnl|bosTau2|chr8 (57524252-57524781)
               

               
               371-899, gnl|Hg17|chr9 (114152318-114152839)
               

               
               371-899, gnl|Mm7|chr4 (62766802-62767291)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-312, gnl|bosTau2|chr8 (57523668-57523871)
               


               
               371-899, gnl|bosTau2|chr8 (57524252-57524781)
               

               
               371-899, gnl|Hg17|chr9 (114152318-114152839)
               

               
               371-899, gnl|Mm7|chr4 (62766802-62767291)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               eep (0.122564)

	123-312, gnl\|bosTau2\|chr8 (57523668-57523871)

	371-899, gnl\|bosTau2\|chr8 (57524252-57524781)
	371-899, gnl\|Hg17\|chr9 (114152318-114152839)
	371-899, gnl\|Mm7\|chr4 (62766802-62767291)