Non-Coding RNA Search

Ss1.1-reep33c_d23.5

Sequence:


               
               CGGCGGCGGCGGCGGCGGCGGGGAAGGAGCAGGAGCGGGCGCGGGCGCAGGCGGAGGAGG
TGGTGGCGGTGGAGGCAGTGGTTAGACATGAACGCCGCCTCGGCGCCGGCGGTGCACGGA
GAGCCCCTTCTCGCGCGCGGGCGGTTTGTGTGATTTTGCTAAAATGCATCACCAACAGCG
AATGGCTGCCTTAGGGACGGACAAAGAGCTGAGTGATTTACTGGATTTCAGTGCGATGTT
TTCACCTCCTGTGAGCAGTGGGAAAAATGGACCAACTTCTTTGGCGAGTGGACATTTTAC
TGGCTCAAATGTAGAAGACAGAAGTAACTCAGGGTCCTGGGGGAGTGGAGGACATCCAAG
CCCGTCCAGGAACTATGGAGATGGGACTCCCTATGACCACATGACCAGCAGGGACCTTGG
GTCACATGACAATCTCTCTCCACCTTTTGTCAATTCCAGAATACAAAGTAAAACAGAAAG
GGGCTCATACTCATCTTATGGGAGAGAATCAAATTTACAGGGTTGCCACCAGCAGAGTCT
CCTTGGAGGTGACATGGATATGGGCAACCCAGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCGGCGGCGGCGGCGGGGAAGGAGCAGGAGCGGGCGCGGGCGCAGGCGGAGGAGG
TGGTGGCGGTGGAGGCAGTGGTTAGACATGAACGCCGCCTCGGCGCCGGCGGTGCACGGA
GAGCCCCTTCTCGCGCGCGGGCGGTTTGTGTGATTTTGCTAAAATGCATCACCAACAGCG
AATGGCTGCCTTAGGGACGGACAAAGAGCTGAGTGATTTACTGGATTTCAGTGCGATGTT
TTCACCTCCTGTGAGCAGTGGGAAAAATGGACCAACTTCTTTGGCGAGTGGACATTTTAC
TGGCTCAAATGTAGAAGACAGAAGTAACTCAGGGTCCTGGGGGAGTGGAGGACATCCAAG
CCCGTCCAGGAACTATGGAGATGGGACTCCCTATGACCACATGACCAGCAGGGACCTTGG
GTCACATGACAATCTCTCTCCACCTTTTGTCAATTCCAGAATACAAAGTAAAACAGAAAG
GGGCTCATACTCATCTTATGGGAGAGAATCAAATTTACAGGGTTGCCACCAGCAGAGTCT
CCTTGGAGGTGACATGGATATGGGCAACCCAGGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26342318|dbj|BAC34821.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26342318|dbj|BAC34821.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               370-474, gnl|bosTau2|chr24 (34791338-34791442)
               

               
               370-474, gnl|canFam2|chr1 (23191542-23191393)
               

               
               370-474, gnl|dasNov1|scaffold_236 (124715-124566)
               

               
               370-474, gnl|echTel1|scaffold_295985 (261342-261193)
               

               
               370-474, gnl|galGal2|chrUn (136355689-136355549)
               

               
               370-474, gnl|hg17|chr18 (51279208-51279357)
               

               
               370-474, gnl|Hg17|chr18 (51279345-51279241)
               

               
               370-474, gnl|loxAfr1|scaffold_145257 (246-396)
               

               
               370-474, gnl|mm7|chr18 (69858077-69857928)
               

               
               370-474, gnl|Mm7|chr18 (69857938-69858042)
               

               
               370-474, gnl|monDom2|scaffold_20 (47768141-47767987)
               

               
               370-474, gnl|oryCun1|scaffold_198338 (184175-184025)
               

               
               370-474, gnl|panTro1|chr17 (47908600-47908749)
               

               
               370-474, gnl|rheMac2|chr18 (48735048-48735197)
               

               
               370-474, gnl|rn3|chr18 (66212643-66212494)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-474, gnl|bosTau2|chr24 (34791338-34791442)
               

               
               370-474, gnl|canFam2|chr1 (23191542-23191393)
               

               
               370-474, gnl|dasNov1|scaffold_236 (124715-124566)
               

               
               370-474, gnl|echTel1|scaffold_295985 (261342-261193)
               

               
               370-474, gnl|galGal2|chrUn (136355689-136355549)
               

               
               370-474, gnl|hg17|chr18 (51279208-51279357)
               

               
               370-474, gnl|Hg17|chr18 (51279345-51279241)
               

               
               370-474, gnl|loxAfr1|scaffold_145257 (246-396)
               

               
               370-474, gnl|mm7|chr18 (69858077-69857928)
               

               
               370-474, gnl|Mm7|chr18 (69857938-69858042)
               

               
               370-474, gnl|monDom2|scaffold_20 (47768141-47767987)
               

               
               370-474, gnl|oryCun1|scaffold_198338 (184175-184025)
               

               
               370-474, gnl|panTro1|chr17 (47908600-47908749)
               

               
               370-474, gnl|rheMac2|chr18 (48735048-48735197)
               

               
               370-474, gnl|rn3|chr18 (66212643-66212494)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.367692)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)

	370-474, gnl\|bosTau2\|chr24 (34791338-34791442)
	370-474, gnl\|canFam2\|chr1 (23191542-23191393)
	370-474, gnl\|dasNov1\|scaffold_236 (124715-124566)
	370-474, gnl\|echTel1\|scaffold_295985 (261342-261193)
	370-474, gnl\|galGal2\|chrUn (136355689-136355549)
	370-474, gnl\|hg17\|chr18 (51279208-51279357)
	370-474, gnl\|Hg17\|chr18 (51279345-51279241)
	370-474, gnl\|loxAfr1\|scaffold_145257 (246-396)
	370-474, gnl\|mm7\|chr18 (69858077-69857928)
	370-474, gnl\|Mm7\|chr18 (69857938-69858042)
	370-474, gnl\|monDom2\|scaffold_20 (47768141-47767987)
	370-474, gnl\|oryCun1\|scaffold_198338 (184175-184025)
	370-474, gnl\|panTro1\|chr17 (47908600-47908749)
	370-474, gnl\|rheMac2\|chr18 (48735048-48735197)
	370-474, gnl\|rn3\|chr18 (66212643-66212494)