Non-Coding RNA Search

Ss1.1-reep33c_p3.5

Sequence:


               
               CAAGGACGTGATTCCCAGGTTGAGTGTGACCAACCTGGAGGACCTGAAGAGGAGACTCTT
GCGGGTGATTGCTCACTGCAACAAGCCCAAGTACAAGATCCTGCTGCGCGGGTGCTGGTA
CGAGCTGTTCGGAGGAAGCCCCGACGATCTTCTGACGGAGCTGGAAGGGGGTGACCTGAC
GCAGCCTCTCCTCGGGGAGCAGAGTCTGCTGGCGCACGGCTCCCCCAGCTACAGCTTCTC
CGGCGAGTCCCCGCTGGAGTCCCCCACCAAGTACCCGCCCCTCTACCCTCCGGGCCGCAT
CATCCACCTGCAGGAAGAGGGCGCCTCGGGGAGGTGTCCTTGCTACGTGGCTGCTCAGTA
CAGCGTGAGATGGTCCCATGAATCCGAATTCAGCAAAATCCTCATCGGCCCGAAGATGCT
GACAGACCACATGCCGGACATCCTGATGAGAGCCTTGGACCGCGTGGTGTCCGACAGGGC
CGCCTGCGTCTCCTGTGCGGCCCAAGGCGGCTCCAGCCTGGACGTGGCCTAACTGGGGCT
GCTGGATGCTGCCCCCGGCCGTGGACTCTGAGCGAGTAAGTCCCATGATGCGGGGACCTG
GTTCCTGGTTGACGTCCTGAATGATGGAGTCATTTGAGAAGGACTTTGGAGCCTGGCCTC
CCAGTTGCTTGTCGGGTGCGAGGCGACGGGCCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGACGTGATTCCCAGGTTGAGTGTGACCAACCTGGAGGACCTGAAGAGGAGACTCTT
GCGGGTGATTGCTCACTGCAACAAGCCCAAGTACAAGATCCTGCTGCGCGGGTGCTGGTA
CGAGCTGTTCGGAGGAAGCCCCGACGATCTTCTGACGGAGCTGGAAGGGGGTGACCTGAC
GCAGCCTCTCCTCGGGGAGCAGAGTCTGCTGGCGCACGGCTCCCCCAGCTACAGCTTCTC
CGGCGAGTCCCCGCTGGAGTCCCCCACCAAGTACCCGCCCCTCTACCCTCCGGGCCGCAT
CATCCACCTGCAGGAAGAGGGCGCCTCGGGGAGGTGTCCTTGCTACGTGGCTGCTCAGTA
CAGCGTGAGATGGTCCCATGAATCCGAATTCAGCAAAATCCTCATCGGCCCGAAGATGCT
GACAGACCACATGCCGGACATCCTGATGAGAGCCTTGGACCGCGTGGTGTCCGACAGGGC
CGCCTGCGTCTCCTGTGCGGCCCAAGGCGGCTCCAGCCTGGACGTGGCCTAACTGGGGCT
GCTGGATGCTGCCCCCGGCCGTGGACTCTGAGCGAGTAAGTCCCATGATGCGGGGACCTG
GTTCCTGGTTGACGTCCTGAATGATGGAGTCATTTGAGAAGGACTTTGGAGCCTGGCCTC
CCAGTTGCTTGTCGGGTGCGAGGCGACGGGCCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18676749|dbj|BAB85017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18676749|dbj|BAB85017.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-336, gnl|bosTau2|chr25 (33363804-33363558)
               

               
               90-336, gnl|Hg17|chr7 (6223253-6222998)
               

               
               90-336, gnl|Mm7|chr5 (142535141-142535393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-336, gnl|bosTau2|chr25 (33363804-33363558)
               

               
               90-336, gnl|Hg17|chr7 (6223253-6222998)
               

               
               90-336, gnl|Mm7|chr5 (142535141-142535393)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               nbm (0.0993246)

	90-336, gnl\|bosTau2\|chr25 (33363804-33363558)
	90-336, gnl\|Hg17\|chr7 (6223253-6222998)
	90-336, gnl\|Mm7\|chr5 (142535141-142535393)