Ss1.1-reep34c_e7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGAAGGGGAGCCCTACGCCGAGCCCAGCCGGGAGGCCCTTGATCGCTGCCCTCGACC GCTGCCATGGACCTGCACGTCTTCGACTACTCGGAGCCGGGGAACTTCTCCGACATCAGC TGGCCATGCAACAGCAGCGACTGCATCGTGGTGGACACGCTGCAGTGCTCCGGGCTGCCC AACAAGAGCGTCCTGCTGTACACGCTGGCCTTCGTTTACATCTTCATCTTCGTCATCGGC ATGATCGCCAACTCCGTGGTGGTCTGGGTGAACATCCAGGCCAAGACCACGGGCTACGAC ACGCACTGCTACATCCTGAACCTGGCCATCGCCGACCTGTGGGTGGTGGTCACCATCCCG GTCTGGGTGGTCAGCCTCGTGCAGCATAACCAGTGGCCCATGGGCGAGCTCACGTGCAAG GTCACCCACCTCATCTTCTCCATCAACCTCTTCGGCAGCATCTTCTTCCTCACGTGCATG AGCGTGGACCGCTACCTGTCCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGAAGGGGAGCCCTACGCCGAGCCCAGCCGGGAGGCCCTTGATCGCTGCCCTCGACC GCTGCCATGGACCTGCACGTCTTCGACTACTCGGAGCCGGGGAACTTCTCCGACATCAGC TGGCCATGCAACAGCAGCGACTGCATCGTGGTGGACACGCTGCAGTGCTCCGGGCTGCCC AACAAGAGCGTCCTGCTGTACACGCTGGCCTTCGTTTACATCTTCATCTTCGTCATCGGC ATGATCGCCAACTCCGTGGTGGTCTGGGTGAACATCCAGGCCAAGACCACGGGCTACGAC ACGCACTGCTACATCCTGAACCTGGCCATCGCCGACCTGTGGGTGGTGGTCACCATCCCG GTCTGGGTGGTCAGCCTCGTGCAGCATAACCAGTGGCCCATGGGCGAGCTCACGTGCAAG GTCACCCACCTCATCTTCTCCATCAACCTCTTCGGCAGCATCTTCTTCCTCACGTGCATG AGCGTGGACCGCTACCTGTCCGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 194-353, - strand, RNAz p=0.82026 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-353, - strand, RNAz p=0.82026 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 36-503, gnl|bosTau2|chr18 (39152774-39152310) | |
| 36-503, gnl|Hg17|chr2 (237271081-237271545) | |
| 36-503, gnl|Mm7|chr1 (90118570-90119034) | |
| 217-501, gnl|bosTau2|chr15 (51921897-51921610) | |
| 217-501, gnl|canFam2|chr18 (41944683-41943889) | |
| 217-501, gnl|danRer3|chr14 (50401552-50402356) | |
| 217-501, gnl|dasNov1|scaffold_130449 (4589-5371) | |
| 217-501, gnl|echTel1|scaffold_268027 (7339-6545) | |
| 217-501, gnl|fr1|chrUn (295971057-295971861) | |
| 217-501, gnl|galGal2|chrUn (57379637-57380438) | |
| 217-501, gnl|hg17|chr11 (56760090-56760884) | |
| 217-501, gnl|Hg17|chr11 (56760952-56760665) | |
| 217-501, gnl|loxAfr1|scaffold_97402 (4149-3355) | |
| 217-501, gnl|mm7|chr2 (84981309-84980515) | |
| 217-501, gnl|Mm7|chr2 (84980445-84980732) | |
| 217-501, gnl|monDom2|scaffold_33 (20291941-20292735) | |
| 217-501, gnl|oryCun1|scaffold_205513 (107638-106844) | |
| 217-501, gnl|panTro1|chr9 (57668109-57668903) | |
| 217-501, gnl|rheMac2|chr14 (16181912-16181118) | |
| 217-501, gnl|rn3|chr3 (68263192-68262398) | |
| 217-501, gnl|tetNig1|chr4 (1480340-1481144) | |
| 217-501, gnl|xenTro1|scaffold_135 (925195-924439) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-503, gnl|bosTau2|chr18 (39152774-39152310) | |
| 36-503, gnl|Hg17|chr2 (237271081-237271545) | |
| 36-503, gnl|Mm7|chr1 (90118570-90119034) | |
| 217-501, gnl|bosTau2|chr15 (51921897-51921610) | |
| 217-501, gnl|canFam2|chr18 (41944683-41943889) | |
| 217-501, gnl|danRer3|chr14 (50401552-50402356) | |
| 217-501, gnl|dasNov1|scaffold_130449 (4589-5371) | |
| 217-501, gnl|echTel1|scaffold_268027 (7339-6545) | |
| 217-501, gnl|fr1|chrUn (295971057-295971861) | |
| 217-501, gnl|galGal2|chrUn (57379637-57380438) | |
| 217-501, gnl|hg17|chr11 (56760090-56760884) | |
| 217-501, gnl|Hg17|chr11 (56760952-56760665) | |
| 217-501, gnl|loxAfr1|scaffold_97402 (4149-3355) | |
| 217-501, gnl|mm7|chr2 (84981309-84980515) | |
| 217-501, gnl|Mm7|chr2 (84980445-84980732) | |
| 217-501, gnl|monDom2|scaffold_33 (20291941-20292735) | |
| 217-501, gnl|oryCun1|scaffold_205513 (107638-106844) | |
| 217-501, gnl|panTro1|chr9 (57668109-57668903) | |
| 217-501, gnl|rheMac2|chr14 (16181912-16181118) | |
| 217-501, gnl|rn3|chr3 (68263192-68262398) | |
| 217-501, gnl|tetNig1|chr4 (1480340-1481144) | |
| 217-501, gnl|xenTro1|scaffold_135 (925195-924439) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| pla (0.133672) | |
| cty (0.10408) |