Non-Coding RNA Search

Ss1.1-reep34c_m18.5

Sequence:


               
               AAACAATCAATGTGCCCTTCTAACCTCATGAGACTCAGAAGGCATGAGTTTATGAGACCC
AGAAGAGGGGATGGATTGGAAAGCGTGCTGCCTGGCTGAGATCATGCCCCACCAGGTTTA
TTGTTCCAAGTTCTGTTTTGCTCTATTGTCTCCTGTACACATCATTCTGTTTGAGGCTGA
ATGTGTCCTGACATGTGTTATATCTCCAGTATGAATTTGTAAGGAAGAATTTTTAAGGAA
GAGAAAGCAGAGAAGAAAAGAATGGTGTTAAAGAATGATCAAAGGAAGAAGGAAGAGAGA
GGAAGTGAAAAAAGTGAAGAAAGAGATGGGAATAGAAGTGAGAATGGCCAAAAGCAGAGC
AAGAGAAGAGAGGGGGTGAGAGTAGGGAAACTGAGAAGTAGAGGTGGAGAGAGAGAGTGT
GAGAACAGTCACTTTGAGTTGTAGCCCCTGACCCTGTACCGCTGTCTGCTTGCCTTCCCG
TTTCAGTGCAAGAAACTCTCCAGGGTCAGGAAGGATGCTGGCTTTCGTGGAAGGGGCATC
CAGGCTCCTACCTTTGTTTGGTTTGTTGTCACTTAGTGCTGTGATTCAACATTTTTTTTT
TCTTCTTAAACTGGATTCTCGTTTGTGAGCGAAGACCAGGAGAAACATGATGACATATCT
TTAACATCCTTTTAGCCCTCCCAGATTTTGGGTGATGCCAGATTAACCACATTGATCACA
CAGGATGTCAGGGTGGAGGGACAGCCTTAGTAGATCTGAAGGGGCCCAGAGACTCACTGC
AGCGGTCTTCCCAGATGATACTGCTAGGAAGCCAGGTTTAGGAACCACTGCCCTGCCCTG
CCCTGAATGGCAGCTTAAACAGTACATCACATCTTTGATTCCTTAGTAGGCATACTTCAA
GGCGTACTTGAAGTGTTAGGAATGGCTTCAAGAGAAGGGGGGACGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAATCAATGTGCCCTTCTAACCTCATGAGACTCAGAAGGCATGAGTTTATGAGACCC
AGAAGAGGGGATGGATTGGAAAGCGTGCTGCCTGGCTGAGATCATGCCCCACCAGGTTTA
TTGTTCCAAGTTCTGTTTTGCTCTATTGTCTCCTGTACACATCATTCTGTTTGAGGCTGA
ATGTGTCCTGACATGTGTTATATCTCCAGTATGAATTTGTAAGGAAGAATTTTTAAGGAA
GAGAAAGCAGAGAAGAAAAGAATGGTGTTAAAGAATGATCAAAGGAAGAAGGAAGAGAGA
GGAAGTGAAAAAAGTGAAGAAAGAGATGGGAATAGAAGTGAGAATGGCCAAAAGCAGAGC
AAGAGAAGAGAGGGGGTGAGAGTAGGGAAACTGAGAAGTAGAGGTGGAGAGAGAGAGTGT
GAGAACAGTCACTTTGAGTTGTAGCCCCTGACCCTGTACCGCTGTCTGCTTGCCTTCCCG
TTTCAGTGCAAGAAACTCTCCAGGGTCAGGAAGGATGCTGGCTTTCGTGGAAGGGGCATC
CAGGCTCCTACCTTTGTTTGGTTTGTTGTCACTTAGTGCTGTGATTCAACATTTTTTTTT
TCTTCTTAAACTGGATTCTCGTTTGTGAGCGAAGACCAGGAGAAACATGATGACATATCT
TTAACATCCTTTTAGCCCTCCCAGATTTTGGGTGATGCCAGATTAACCACATTGATCACA
CAGGATGTCAGGGTGGAGGGACAGCCTTAGTAGATCTGAAGGGGCCCAGAGACTCACTGC
AGCGGTCTTCCCAGATGATACTGCTAGGAAGCCAGGTTTAGGAACCACTGCCCTGCCCTG
CCCTGAATGGCAGCTTAAACAGTACATCACATCTTTGATTCCTTAGTAGGCATACTTCAA
GGCGTACTTGAAGTGTTAGGAATGGCTTCAAGAGAAGGGGGGACGGCA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-510, gnl|bosTau2|chr5 (27643044-27643550)
               

               
               2-510, gnl|Hg17|chr12 (40764655-40764180)
               


               
               569-944, gnl|bosTau2|chr5 (27643644-27644023)
               

               
               569-944, gnl|Hg17|chr12 (40764087-40763717)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-510, gnl|bosTau2|chr5 (27643044-27643550)
               

               
               2-510, gnl|Hg17|chr12 (40764655-40764180)
               


               
               569-944, gnl|bosTau2|chr5 (27643644-27644023)
               

               
               569-944, gnl|Hg17|chr12 (40764087-40763717)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eep (0.122564)

	2-510, gnl\|bosTau2\|chr5 (27643044-27643550)
	2-510, gnl\|Hg17\|chr12 (40764655-40764180)

	569-944, gnl\|bosTau2\|chr5 (27643644-27644023)
	569-944, gnl\|Hg17\|chr12 (40764087-40763717)