Non-Coding RNA Search

Ss1.1-reep35c_a24.5

Sequence:


               
               CACAGGGCTCCGGGGAGGTCAGGCCCTGCAGGACTGGAATGGACTGGCGGTGGCTCCGAT
TCAAGCCCGGCAGGCTCATGGTCACCTGGCAGTGGAGGGTGGGTGGGGCAGGGATTCCCA
AGGGAGGCAGCAACCAGCGTTCTGTCACTTGGAACAGTGGGTCCTCATCCTCCTGGGGCT
CCTCCATCACATCCCTGTCCAGGGTCTGCACCCCCTCAAGTTCCTGATCCCCCAGGAGCA
GGGACATGGAGAAGACATCAGGGCGAGCAGGGCTGACATTGTGGGCTGTGCAGGCTACCT
CTCGGTCCCGCCCAGGCACCAGGGACTCTGGTGACACAGTCAGCTGGTCAGGGAAGGCGA
ACACCAGGAGATTCACTGTGTGATGGAAAGAGCGTTTCCCGCAGTAGCCCACGCACATGC
GGGTCCCCGCAGCCGACAGCGAGGCGTTGTGCACCCAGAGGACGCTGCTGCCCGTGCCTG
ACTTTACGGAGCCCAGGCTGGTGTTCAGGCCCCGCCACTGCACCGAGGCCACCTGGCCGT
CTGCGCAGGCCAGGCGACAGGCGAACTGCCGCGACTCGCCCACAGCCACAGCCACCTCGG
GCTCCGGGGGCTCCACCTCCAGCCGCCCACCGTGGCCAGGCTGGAGCAGCCCCAGAAAGA
GGGGAAGCAGGAGGGCGAGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGGGCTCCGGGGAGGTCAGGCCCTGCAGGACTGGAATGGACTGGCGGTGGCTCCGAT
TCAAGCCCGGCAGGCTCATGGTCACCTGGCAGTGGAGGGTGGGTGGGGCAGGGATTCCCA
AGGGAGGCAGCAACCAGCGTTCTGTCACTTGGAACAGTGGGTCCTCATCCTCCTGGGGCT
CCTCCATCACATCCCTGTCCAGGGTCTGCACCCCCTCAAGTTCCTGATCCCCCAGGAGCA
GGGACATGGAGAAGACATCAGGGCGAGCAGGGCTGACATTGTGGGCTGTGCAGGCTACCT
CTCGGTCCCGCCCAGGCACCAGGGACTCTGGTGACACAGTCAGCTGGTCAGGGAAGGCGA
ACACCAGGAGATTCACTGTGTGATGGAAAGAGCGTTTCCCGCAGTAGCCCACGCACATGC
GGGTCCCCGCAGCCGACAGCGAGGCGTTGTGCACCCAGAGGACGCTGCTGCCCGTGCCTG
ACTTTACGGAGCCCAGGCTGGTGTTCAGGCCCCGCCACTGCACCGAGGCCACCTGGCCGT
CTGCGCAGGCCAGGCGACAGGCGAACTGCCGCGACTCGCCCACAGCCACAGCCACCTCGG
GCTCCGGGGGCTCCACCTCCAGCCGCCCACCGTGGCCAGGCTGGAGCAGCCCCAGAAAGA
GGGGAAGCAGGAGGGCGAGGCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55420638|gb|AAV52174.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55420638|gb|AAV52174.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               34-358, gnl|bosTau2|chr7 (10694293-10693972)
               

               
               34-358, gnl|Hg17|chr19 (449825-449495)
               

               
               34-358, gnl|Mm7|chr10 (79445763-79445436)
               


               
               360-631, gnl|bosTau2|chr7 (10693559-10693288)
               

               
               360-631, gnl|Hg17|chr19 (449115-448846)
               

               
               360-631, gnl|Mm7|chr10 (79445182-79444917)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-358, gnl|bosTau2|chr7 (10694293-10693972)
               

               
               34-358, gnl|Hg17|chr19 (449825-449495)
               

               
               34-358, gnl|Mm7|chr10 (79445763-79445436)
               


               
               360-631, gnl|bosTau2|chr7 (10693559-10693288)
               

               
               360-631, gnl|Hg17|chr19 (449115-448846)
               

               
               360-631, gnl|Mm7|chr10 (79445182-79444917)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	34-358, gnl\|bosTau2\|chr7 (10694293-10693972)
	34-358, gnl\|Hg17\|chr19 (449825-449495)
	34-358, gnl\|Mm7\|chr10 (79445763-79445436)

	360-631, gnl\|bosTau2\|chr7 (10693559-10693288)
	360-631, gnl\|Hg17\|chr19 (449115-448846)
	360-631, gnl\|Mm7\|chr10 (79445182-79444917)