Non-Coding RNA Search

Ss1.1-reep35c_f1.5

Sequence:


               
               ACACTAACAGGCTCCTGCGGAACCTACTTACGGAAGTGAAGCAAAACGGCTTCCATTTCG
CACGAACGAGCGCAGTTTCCCACGGCCCCAGGGGAGGTACAACGATACACTATGAATTCT
AAGCATTGACCCCGCACGGCGTCACCTCCCTAAGCCCCGCCCCCTACGGCGCCTTCTAAA
CGCGTCCTTCCGTCTGCTTCCTTCTCTCTGCTCTTCTCCGCCGTCCTGTGTGCGGTTGAA
TTAGTTCCTCGCCATGTCTTCTCACAAGACTTTCAGGATCAAGCGATTCTTGGCCAAGAA
GCAAAAGCAGAATCGTCCCATCCCCCAATGGATTCGGATGAAAACTGGTAATAAAATCAG
GTACAACTCGAAGAGAAGACATTGGAGAAGAACCAAGCTGGGTCTCTAAGGAGCCTCCAC
GTGTGAGGTGGTGCACATATTGATGCTGTGTGGCAGTTATTTCCTTGCATTTTACCATAT
CACTGAAAACGGCACAGCCACCGTTGGATATATCTGGAAATGGGTTCTCTTTATGTTGTT
GTTTCTGTATAGCGCTTTGCCTCAGTAATAAACATGTGAAGGCCTCTCCTTGGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTAACAGGCTCCTGCGGAACCTACTTACGGAAGTGAAGCAAAACGGCTTCCATTTCG
CACGAACGAGCGCAGTTTCCCACGGCCCCAGGGGAGGTACAACGATACACTATGAATTCT
AAGCATTGACCCCGCACGGCGTCACCTCCCTAAGCCCCGCCCCCTACGGCGCCTTCTAAA
CGCGTCCTTCCGTCTGCTTCCTTCTCTCTGCTCTTCTCCGCCGTCCTGTGTGCGGTTGAA
TTAGTTCCTCGCCATGTCTTCTCACAAGACTTTCAGGATCAAGCGATTCTTGGCCAAGAA
GCAAAAGCAGAATCGTCCCATCCCCCAATGGATTCGGATGAAAACTGGTAATAAAATCAG
GTACAACTCGAAGAGAAGACATTGGAGAAGAACCAAGCTGGGTCTCTAAGGAGCCTCCAC
GTGTGAGGTGGTGCACATATTGATGCTGTGTGGCAGTTATTTCCTTGCATTTTACCATAT
CACTGAAAACGGCACAGCCACCGTTGGATATATCTGGAAATGGGTTCTCTTTATGTTGTT
GTTTCTGTATAGCGCTTTGCCTCAGTAATAAACATGTGAAGGCCTCTCCTTGGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13385552|ref|NP_080331.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385552|ref|NP_080331.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               292-416, + strand, RNAz p=0.75918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               292-416, + strand, RNAz p=0.75918

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               174-416, gnl|bosTau2|chr19 (37643377-37643613)
               

               
               174-416, gnl|Hg17|chr17 (30917590-30917809)
               

               
               174-416, gnl|Mm7|chr16 (9846264-9846469)
               


               
               204-414, gnl|bosTau2|chr10 (52889302-52889512)
               

               
               204-414, gnl|Hg17|chr6 (74139758-74139548)
               

               
               204-414, gnl|Mm7|chr16 (9846260-9846474)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-416, gnl|bosTau2|chr19 (37643377-37643613)
               

               
               174-416, gnl|Hg17|chr17 (30917590-30917809)
               

               
               174-416, gnl|Mm7|chr16 (9846264-9846469)
               


               
               204-414, gnl|bosTau2|chr10 (52889302-52889512)
               

               
               204-414, gnl|Hg17|chr6 (74139758-74139548)
               

               
               204-414, gnl|Mm7|chr16 (9846260-9846474)

Expressed library(ies): 76 entry(ies)

More info

Expressed library(ies): 76 entry(ies)

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               mcp (4.26621)
               

               
               fty (3.69263)
               

               
               duo (3.28322)
               

               
               eje (2.56968)
               

               
               lnt (2.41924)
               

               
               nco (1.94081)
               

               
               nlu (1.91681)
               

               
               nca (1.91623)
               

               
               cag (1.81433)
               

               
               eru (1.80072)
               

               
               eye (1.70503)
               

               
               mas (1.68244)
               

               
               amn (1.67084)
               

               
               ece (1.60514)
               

               
               nms (1.49701)
               

               
               jca (1.48148)
               

               
               med (1.39502)
               

               
               jej (1.3849)
               

               
               nje (1.32736)
               

               
               nep (1.28747)
               

               
               sag (1.27901)
               

               
               csk (1.26671)
               

               
               fbs (1.22742)
               

               
               cbe (1.19617)
               

               
               nmm (1.19522)
               

               
               ebs (1.18301)
               

               
               col (1.17005)
               

               
               pty (1.14172)
               

               
               ese (1.13852)
               

               
               cga (1.11638)
               

               
               fce (1.08637)
               

               
               bfe (1.049)
               

               
               ecc (1.03532)
               

               
               fli (1.0144)
               

               
               fcc (0.988924)
               

               
               csp (0.967118)
               

               
               eep (0.857948)
               

               
               nbm (0.794597)
               

               
               elu (0.770713)
               

               
               cmu (0.745573)
               

               
               sto (0.719295)
               

               
               ill (0.702371)
               

               
               ton (0.702001)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               cli (0.611247)
               

               
               cly (0.603209)
               

               
               aor (0.585823)
               

               
               hyp (0.571347)
               

               
               cov (0.528611)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               hlv (0.417769)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               cbr (0.255951)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 76 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (4.26621)
               

               
               fty (3.69263)
               

               
               duo (3.28322)
               

               
               eje (2.56968)
               

               
               lnt (2.41924)
               

               
               nco (1.94081)
               

               
               nlu (1.91681)
               

               
               nca (1.91623)
               

               
               cag (1.81433)
               

               
               eru (1.80072)
               

               
               eye (1.70503)
               

               
               mas (1.68244)
               

               
               amn (1.67084)
               

               
               ece (1.60514)
               

               
               nms (1.49701)
               

               
               jca (1.48148)
               

               
               med (1.39502)
               

               
               jej (1.3849)
               

               
               nje (1.32736)
               

               
               nep (1.28747)
               

               
               sag (1.27901)
               

               
               csk (1.26671)
               

               
               fbs (1.22742)
               

               
               cbe (1.19617)
               

               
               nmm (1.19522)
               

               
               ebs (1.18301)
               

               
               col (1.17005)
               

               
               pty (1.14172)
               

               
               ese (1.13852)
               

               
               cga (1.11638)
               

               
               fce (1.08637)
               

               
               bfe (1.049)
               

               
               ecc (1.03532)
               

               
               fli (1.0144)
               

               
               fcc (0.988924)
               

               
               csp (0.967118)
               

               
               eep (0.857948)
               

               
               nbm (0.794597)
               

               
               elu (0.770713)
               

               
               cmu (0.745573)
               

               
               sto (0.719295)
               

               
               ill (0.702371)
               

               
               ton (0.702001)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               cli (0.611247)
               

               
               cly (0.603209)
               

               
               aor (0.585823)
               

               
               hyp (0.571347)
               

               
               cov (0.528611)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               hlv (0.417769)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               cbr (0.255951)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               cty (0.10408)

	174-416, gnl\|bosTau2\|chr19 (37643377-37643613)
	174-416, gnl\|Hg17\|chr17 (30917590-30917809)
	174-416, gnl\|Mm7\|chr16 (9846264-9846469)

	204-414, gnl\|bosTau2\|chr10 (52889302-52889512)
	204-414, gnl\|Hg17\|chr6 (74139758-74139548)
	204-414, gnl\|Mm7\|chr16 (9846260-9846474)

	mcp (4.26621)
	fty (3.69263)
	duo (3.28322)
	eje (2.56968)
	lnt (2.41924)
	nco (1.94081)
	nlu (1.91681)
	nca (1.91623)
	cag (1.81433)
	eru (1.80072)
	eye (1.70503)
	mas (1.68244)
	amn (1.67084)
	ece (1.60514)
	nms (1.49701)
	jca (1.48148)
	med (1.39502)
	jej (1.3849)
	nje (1.32736)
	nep (1.28747)
	sag (1.27901)
	csk (1.26671)
	fbs (1.22742)
	cbe (1.19617)
	nmm (1.19522)
	ebs (1.18301)
	col (1.17005)
	pty (1.14172)
	ese (1.13852)
	cga (1.11638)
	fce (1.08637)
	bfe (1.049)
	ecc (1.03532)
	fli (1.0144)
	fcc (0.988924)
	csp (0.967118)
	eep (0.857948)
	nbm (0.794597)
	elu (0.770713)
	cmu (0.745573)
	sto (0.719295)
	ill (0.702371)
	ton (0.702001)
	fhi (0.678311)
	ute (0.663922)
	cli (0.611247)
	cly (0.603209)
	aor (0.585823)
	hyp (0.571347)
	cov (0.528611)
	rec (0.519211)
	pro (0.512033)
	hlv (0.417769)
	thg (0.380373)
	vin (0.332557)
	eli (0.303628)
	lun (0.300978)
	cte (0.29274)
	cst (0.280073)
	kid (0.259471)
	ova (0.258264)
	ret (0.257467)
	cbr (0.255951)
	mgp (0.230681)
	spc (0.226732)
	tes (0.207814)
	mgm (0.180343)
	cut (0.169924)
	cki (0.165235)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	pla (0.133672)
	cty (0.10408)