Ss1.1-reep35c_j3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGGTGGGCTACACAGAGAGGCAGCGGCGGGACTTCCTCAGCGAGGCCTCCATCATGG GTCAGTTTGACCACCCCAACATCATCCGCCTGGAGGGTGTGGTCACCAAAAGCCGGCCAG TCATGATCCTCACTGAGTTCATGGAGAACTGCGCCCTGGACTCCTTCCTCCGGCTCAACG ACGGACAGTTCACGGTCATCCAGCTGGTGGGCATGTTGCGGGGCATTGCTGCTGGCATGA AGTACCTGTCGGAGATGAACTATGTGCACCGCGACCTGGCTGCCCGCAACATCCTCGTTA ACAGCAACCTGGTCTGCAAAGTCTCAGACTTCGGCCTCTCCCGCTTCCTGGAGGATGATC CCGCTGATCCTACATATACCAGCTCCCTGGGCGGGAAGATCCCCATCCGCTGGACCGCCC CAGAGGCCATAGCCTATCGGAAGTTCACTTCTGCTAGTGATGTCTGGAGCTATGGAATCG TCATGTGGGAGGTCATGAGCTACGGCGAGCGACCGTACTGGGACATGAGCAACCAGGATG TCATCAATGCCGTGGAGCAGGATTACCGGCTGCCCCCACCCATGGACTGCCCCACTGCGC TGCACCAACTCATGCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAATTCTCCC AGATTGTCAACACCCTGGATAAGCTCATCCGCAACGCCGCCAGCCTTAAAGTCATCGCCA GTGCCCAGTCTGGCATGTCACAACCCCTCCTGGACCGGACGGTCCCGGACTACACCACCT TCACGACAGTTGGTGACTGGCTGGACGCCATCAAGATGGGGCGGTACAAGGAGAGCTTCG TCAGCGCGGGGTTTGCATCCTTTGACCTGGTGGCCCAGATGACCGCAGAAGACCTGCTCC GGATCGGGGTCACCTTGGCTGGCCACCAGAAGAAGATCCTCAGCAGTATCCAGGACATGC GCCTGCAGATGAACCAGACACTGCCTGTGCAGGTCTGACACCCGACCCCCACTGGGTGGG TGCTCCCCCCCCCAACGACTGTGCAGGGACTCTGACCAGCCGGCTGGACGTGTGGACTTT TGGATGCCTGGCCTTAGGCTGTGGCCCAGAAGATGGAGGTTTGGGGAGGGCCCAAGCTGG GACTTCACCTCCAGGCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATT GAAGATGGATTAGGAGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTC CTGCTCTCCAGTGGGGGAATCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGT CCTGGCACCGTCAGGNGGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGG TCTGGCCCCCAGGTAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGG GAATGGGGGAATGTGACACCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGA CTTGTTCTGGGGGCTGAGGGCCTGCCCACCCCCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGGTGGGCTACACAGAGAGGCAGCGGCGGGACTTCCTCAGCGAGGCCTCCATCATGG GTCAGTTTGACCACCCCAACATCATCCGCCTGGAGGGTGTGGTCACCAAAAGCCGGCCAG TCATGATCCTCACTGAGTTCATGGAGAACTGCGCCCTGGACTCCTTCCTCCGGCTCAACG ACGGACAGTTCACGGTCATCCAGCTGGTGGGCATGTTGCGGGGCATTGCTGCTGGCATGA AGTACCTGTCGGAGATGAACTATGTGCACCGCGACCTGGCTGCCCGCAACATCCTCGTTA ACAGCAACCTGGTCTGCAAAGTCTCAGACTTCGGCCTCTCCCGCTTCCTGGAGGATGATC CCGCTGATCCTACATATACCAGCTCCCTGGGCGGGAAGATCCCCATCCGCTGGACCGCCC CAGAGGCCATAGCCTATCGGAAGTTCACTTCTGCTAGTGATGTCTGGAGCTATGGAATCG TCATGTGGGAGGTCATGAGCTACGGCGAGCGACCGTACTGGGACATGAGCAACCAGGATG TCATCAATGCCGTGGAGCAGGATTACCGGCTGCCCCCACCCATGGACTGCCCCACTGCGC TGCACCAACTCATGCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAATTCTCCC AGATTGTCAACACCCTGGATAAGCTCATCCGCAACGCCGCCAGCCTTAAAGTCATCGCCA GTGCCCAGTCTGGCATGTCACAACCCCTCCTGGACCGGACGGTCCCGGACTACACCACCT TCACGACAGTTGGTGACTGGCTGGACGCCATCAAGATGGGGCGGTACAAGGAGAGCTTCG TCAGCGCGGGGTTTGCATCCTTTGACCTGGTGGCCCAGATGACCGCAGAAGACCTGCTCC GGATCGGGGTCACCTTGGCTGGCCACCAGAAGAAGATCCTCAGCAGTATCCAGGACATGC GCCTGCAGATGAACCAGACACTGCCTGTGCAGGTCTGACACCCGACCCCCACTGGGTGGG TGCTCCCCCCCCCAACGACTGTGCAGGGACTCTGACCAGCCGGCTGGACGTGTGGACTTT TGGATGCCTGGCCTTAGGCTGTGGCCCAGAAGATGGAGGTTTGGGGAGGGCCCAAGCTGG GACTTCACCTCCAGGCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATT GAAGATGGATTAGGAGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTC CTGCTCTCCAGTGGGGGAATCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGT CCTGGCACCGTCAGGNGGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGG TCTGGCCCCCAGGTAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGG GAATGGGGGAATGTGACACCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGA CTTGTTCTGGGGGCTGAGGGCCTGCCCACCCCCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1076-1536, - strand, RNAz p=0.999163 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1076-1536, - strand, RNAz p=0.999163 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr2 (83718217-83718325) | |
| 1-109, gnl|canFam2|chr2 (84450215-84450077) | |
| 1-109, gnl|danRer3|chr23 (42634401-42634527) | |
| 1-109, gnl|dasNov1|scaffold_41279 (6539-6415) | |
| 1-109, gnl|echTel1|scaffold_313256 (36989-36865) | |
| 1-109, gnl|fr1|chrUn (104982438-104982312) | |
| 1-109, gnl|galGal2|chr21 (4169463-4169594) | |
| 1-109, gnl|hg17|chr1 (16204970-16205108) | |
| 1-109, gnl|Hg17|chr1 (16205091-16204983) | |
| 1-109, gnl|loxAfr1|scaffold_7748 (20507-20385) | |
| 1-109, gnl|mm7|chr4 (140700344-140700206) | |
| 1-109, gnl|Mm7|chr4 (140700221-140700329) | |
| 1-109, gnl|monDom2|scaffold_109 (2942864-2942731) | |
| 1-109, gnl|oryCun1|scaffold_184704 (2763-2901) | |
| 1-109, gnl|panTro1|chr1 (23334503-23334387) | |
| 1-109, gnl|rheMac2|chr1 (18938517-18938655) | |
| 1-109, gnl|rn3|chr5 (160216241-160216103) | |
| 1-109, gnl|tetNig1|chrUn_random (28410806-28410932) | |
| 1-109, gnl|xenTro1|scaffold_209 (657902-658037) | |
| 168-390, gnl|bosTau2|chr1 (53889232-53889010) | |
| 168-390, gnl|Hg17|chr3 (185780886-185781108) | |
| 168-390, gnl|Mm7|chr16 (20870712-20870934) | |
| 540-733, gnl|bosTau2|chr1 (53888658-53888465) | |
| 540-733, gnl|canFam2|chr34 (20438130-20438331) | |
| 540-733, gnl|danRer3|chr23 (20850838-20851039) | |
| 540-733, gnl|dasNov1|scaffold_41279 (11272-11472) | |
| 540-733, gnl|echTel1|scaffold_313256 (40547-40704) | |
| 540-733, gnl|fr1|chrUn (23720315-23720500) | |
| 540-733, gnl|galGal2|chr9 (15252154-15251953) | |
| 540-733, gnl|hg17|chr3 (185781460-185781661) | |
| 540-733, gnl|Hg17|chr3 (185781462-185781655) | |
| 540-733, gnl|loxAfr1|scaffold_7748 (23179-23365) | |
| 540-733, gnl|mm7|chr16 (20871296-20871497) | |
| 540-733, gnl|Mm7|chr16 (20871298-20871491) | |
| 540-733, gnl|monDom2|scaffold_66 (2687803-2687602) | |
| 540-733, gnl|oryCun1|scaffold_191128 (6407-6206) | |
| 540-733, gnl|panTro1|chr2 (189747641-189747842) | |
| 540-733, gnl|rheMac2|chr2 (102069650-102069449) | |
| 540-733, gnl|rn3|chr11 (82086669-82086468) | |
| 540-733, gnl|tetNig1|chr15 (3258997-3258796) | |
| 540-733, gnl|xenTro1|scaffold_244 (783005-782804) | |
| 750-882, gnl|bosTau2|chr2 (83267745-83267613) | |
| 750-882, gnl|canFam2|chr2 (79321435-79321253) | |
| 750-882, gnl|danRer3|chr23 (29394509-29394345) | |
| 750-882, gnl|dasNov1|scaffold_66702 (11265-11097) | |
| 750-882, gnl|echTel1|scaffold_300595 (5113-5281) | |
| 750-882, gnl|fr1|chrUn (23723541-23723725) | |
| 750-882, gnl|galGal2|chr21 (5683328-5683155) | |
| 750-882, gnl|hg17|chr1 (22984238-22984420) | |
| 750-882, gnl|Hg17|chr1 (22984259-22984391) | |
| 750-882, gnl|loxAfr1|scaffold_71559 (8433-8251) | |
| 750-882, gnl|mm7|chr4 (136034512-136034331) | |
| 750-882, gnl|Mm7|chr4 (136034489-136034357) | |
| 750-882, gnl|monDom2|scaffold_90 (4960764-4960945) | |
| 750-882, gnl|oryCun1|scaffold_191128 (6113-5948) | |
| 750-882, gnl|panTro1|chr2 (189747941-189748087) | |
| 750-882, gnl|rheMac2|chr2 (102069372-102069204) | |
| 750-882, gnl|rn3|chr5 (155433847-155433665) | |
| 750-882, gnl|tetNig1|chrUn_random (128939164-128938992) | |
| 750-882, gnl|xenTro1|scaffold_361 (912789-912622) | |
| 885-1536, gnl|bosTau2|chr1 (53888118-53887466) | |
| 885-1536, gnl|Hg17|chr3 (185782000-185782647) | |
| 885-1536, gnl|Mm7|chr16 (20871837-20872467) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr2 (83718217-83718325) | |
| 1-109, gnl|canFam2|chr2 (84450215-84450077) | |
| 1-109, gnl|danRer3|chr23 (42634401-42634527) | |
| 1-109, gnl|dasNov1|scaffold_41279 (6539-6415) | |
| 1-109, gnl|echTel1|scaffold_313256 (36989-36865) | |
| 1-109, gnl|fr1|chrUn (104982438-104982312) | |
| 1-109, gnl|galGal2|chr21 (4169463-4169594) | |
| 1-109, gnl|hg17|chr1 (16204970-16205108) | |
| 1-109, gnl|Hg17|chr1 (16205091-16204983) | |
| 1-109, gnl|loxAfr1|scaffold_7748 (20507-20385) | |
| 1-109, gnl|mm7|chr4 (140700344-140700206) | |
| 1-109, gnl|Mm7|chr4 (140700221-140700329) | |
| 1-109, gnl|monDom2|scaffold_109 (2942864-2942731) | |
| 1-109, gnl|oryCun1|scaffold_184704 (2763-2901) | |
| 1-109, gnl|panTro1|chr1 (23334503-23334387) | |
| 1-109, gnl|rheMac2|chr1 (18938517-18938655) | |
| 1-109, gnl|rn3|chr5 (160216241-160216103) | |
| 1-109, gnl|tetNig1|chrUn_random (28410806-28410932) | |
| 1-109, gnl|xenTro1|scaffold_209 (657902-658037) | |
| 168-390, gnl|bosTau2|chr1 (53889232-53889010) | |
| 168-390, gnl|Hg17|chr3 (185780886-185781108) | |
| 168-390, gnl|Mm7|chr16 (20870712-20870934) | |
| 540-733, gnl|bosTau2|chr1 (53888658-53888465) | |
| 540-733, gnl|canFam2|chr34 (20438130-20438331) | |
| 540-733, gnl|danRer3|chr23 (20850838-20851039) | |
| 540-733, gnl|dasNov1|scaffold_41279 (11272-11472) | |
| 540-733, gnl|echTel1|scaffold_313256 (40547-40704) | |
| 540-733, gnl|fr1|chrUn (23720315-23720500) | |
| 540-733, gnl|galGal2|chr9 (15252154-15251953) | |
| 540-733, gnl|hg17|chr3 (185781460-185781661) | |
| 540-733, gnl|Hg17|chr3 (185781462-185781655) | |
| 540-733, gnl|loxAfr1|scaffold_7748 (23179-23365) | |
| 540-733, gnl|mm7|chr16 (20871296-20871497) | |
| 540-733, gnl|Mm7|chr16 (20871298-20871491) | |
| 540-733, gnl|monDom2|scaffold_66 (2687803-2687602) | |
| 540-733, gnl|oryCun1|scaffold_191128 (6407-6206) | |
| 540-733, gnl|panTro1|chr2 (189747641-189747842) | |
| 540-733, gnl|rheMac2|chr2 (102069650-102069449) | |
| 540-733, gnl|rn3|chr11 (82086669-82086468) | |
| 540-733, gnl|tetNig1|chr15 (3258997-3258796) | |
| 540-733, gnl|xenTro1|scaffold_244 (783005-782804) | |
| 750-882, gnl|bosTau2|chr2 (83267745-83267613) | |
| 750-882, gnl|canFam2|chr2 (79321435-79321253) | |
| 750-882, gnl|danRer3|chr23 (29394509-29394345) | |
| 750-882, gnl|dasNov1|scaffold_66702 (11265-11097) | |
| 750-882, gnl|echTel1|scaffold_300595 (5113-5281) | |
| 750-882, gnl|fr1|chrUn (23723541-23723725) | |
| 750-882, gnl|galGal2|chr21 (5683328-5683155) | |
| 750-882, gnl|hg17|chr1 (22984238-22984420) | |
| 750-882, gnl|Hg17|chr1 (22984259-22984391) | |
| 750-882, gnl|loxAfr1|scaffold_71559 (8433-8251) | |
| 750-882, gnl|mm7|chr4 (136034512-136034331) | |
| 750-882, gnl|Mm7|chr4 (136034489-136034357) | |
| 750-882, gnl|monDom2|scaffold_90 (4960764-4960945) | |
| 750-882, gnl|oryCun1|scaffold_191128 (6113-5948) | |
| 750-882, gnl|panTro1|chr2 (189747941-189748087) | |
| 750-882, gnl|rheMac2|chr2 (102069372-102069204) | |
| 750-882, gnl|rn3|chr5 (155433847-155433665) | |
| 750-882, gnl|tetNig1|chrUn_random (128939164-128938992) | |
| 750-882, gnl|xenTro1|scaffold_361 (912789-912622) | |
| 885-1536, gnl|bosTau2|chr1 (53888118-53887466) | |
| 885-1536, gnl|Hg17|chr3 (185782000-185782647) | |
| 885-1536, gnl|Mm7|chr16 (20871837-20872467) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) |