Non-Coding RNA Search

Ss1.1-reje01b_d18.5

Sequence:


               
               CAGAGCTGCCCTCATCGGGAGCCGGGCGTCTGTGGGATTGGCGATGAGCCCCGTGCTGCG
GGAGTTCCTGAGGGAGCTCCCAGGCTGGTTCCTGCTCTCGGGGGTCTTCCTGCCTGTGAC
TTTGCTGCTCCTCCTTCTCATCGCCTATTTCAGGATCAAACTGATGGAGGTTAATGAAGA
ACTGTCACAGACTTCCGATCGCCAACACAATCACGAGGCTGGCTCTTCCCTGAACCAGAG
AAAGAAACGGACGTGACTGTTGGGGACTGATCAATGGCTAAAGCACAGTACGTTTCTACT
GGTCAGAGAGCCACGGTCACTGGCTTAGCAAATAAAGTAGGTTAATAAACCAGAACCACA
GCAAAACAGGAAGAATACTAAGATGCTTGCTCTGAACCATATTGGAAAGTGGCAGCTATT
ATCCAAGAGGAAGGCTATGAGACTCAGCTTAAATAGCAGTTCTTCAGAGAGTCCCAAGAA
AGTAAGATTTGTTGGATGTTCTCTATGAACTGGATGTGTTGTAACTTTTTAATTTTTATA
GGACCATGTCTGCTCTGAAGGGCATTATTTTCAAAATAAAATTCTTAAGTGTCATTATTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCTGCCCTCATCGGGAGCCGGGCGTCTGTGGGATTGGCGATGAGCCCCGTGCTGCG
GGAGTTCCTGAGGGAGCTCCCAGGCTGGTTCCTGCTCTCGGGGGTCTTCCTGCCTGTGAC
TTTGCTGCTCCTCCTTCTCATCGCCTATTTCAGGATCAAACTGATGGAGGTTAATGAAGA
ACTGTCACAGACTTCCGATCGCCAACACAATCACGAGGCTGGCTCTTCCCTGAACCAGAG
AAAGAAACGGACGTGACTGTTGGGGACTGATCAATGGCTAAAGCACAGTACGTTTCTACT
GGTCAGAGAGCCACGGTCACTGGCTTAGCAAATAAAGTAGGTTAATAAACCAGAACCACA
GCAAAACAGGAAGAATACTAAGATGCTTGCTCTGAACCATATTGGAAAGTGGCAGCTATT
ATCCAAGAGGAAGGCTATGAGACTCAGCTTAAATAGCAGTTCTTCAGAGAGTCCCAAGAA
AGTAAGATTTGTTGGATGTTCTCTATGAACTGGATGTGTTGTAACTTTTTAATTTTTATA
GGACCATGTCTGCTCTGAAGGGCATTATTTTCAAAATAAAATTCTTAAGTGTCATTATTA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|42657461|ref|XP_379432.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42657461|ref|XP_379432.1|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               170-600, gnl|bosTau2|chr9 (39287898-39288322)
               

               
               170-600, gnl|dasNov1|scaffold_726 (33953-34364)
               

               
               170-600, gnl|echTel1|scaffold_297089 (932-510)
               

               
               170-600, gnl|hg17|chr6 (131197595-131198010)
               

               
               170-600, gnl|Hg17|chr6 (131197702-131198120)
               

               
               170-600, gnl|mm7|chr10 (25280595-25280246)
               

               
               170-600, gnl|monDom2|scaffold_0 (81274555-81274086)
               

               
               170-600, gnl|oryCun1|scaffold_199067 (104886-105265)
               

               
               170-600, gnl|panTro1|chr5 (133851824-133852239)
               

               
               170-600, gnl|rheMac2|chr4 (133051061-133050649)
               

               
               170-600, gnl|rn3|chr1 (20338791-20339106)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-600, gnl|bosTau2|chr9 (39287898-39288322)
               

               
               170-600, gnl|dasNov1|scaffold_726 (33953-34364)
               

               
               170-600, gnl|echTel1|scaffold_297089 (932-510)
               

               
               170-600, gnl|hg17|chr6 (131197595-131198010)
               

               
               170-600, gnl|Hg17|chr6 (131197702-131198120)
               

               
               170-600, gnl|mm7|chr10 (25280595-25280246)
               

               
               170-600, gnl|monDom2|scaffold_0 (81274555-81274086)
               

               
               170-600, gnl|oryCun1|scaffold_199067 (104886-105265)
               

               
               170-600, gnl|panTro1|chr5 (133851824-133852239)
               

               
               170-600, gnl|rheMac2|chr4 (133051061-133050649)
               

               
               170-600, gnl|rn3|chr1 (20338791-20339106)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cki (0.660939)
               

               
               sin (0.524843)
               

               
               cte (0.29274)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               sin (0.524843)
               

               
               cte (0.29274)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eje (0.0988338)

	170-600, gnl\|bosTau2\|chr9 (39287898-39288322)
	170-600, gnl\|dasNov1\|scaffold_726 (33953-34364)
	170-600, gnl\|echTel1\|scaffold_297089 (932-510)
	170-600, gnl\|hg17\|chr6 (131197595-131198010)
	170-600, gnl\|Hg17\|chr6 (131197702-131198120)
	170-600, gnl\|mm7\|chr10 (25280595-25280246)
	170-600, gnl\|monDom2\|scaffold_0 (81274555-81274086)
	170-600, gnl\|oryCun1\|scaffold_199067 (104886-105265)
	170-600, gnl\|panTro1\|chr5 (133851824-133852239)
	170-600, gnl\|rheMac2\|chr4 (133051061-133050649)
	170-600, gnl\|rn3\|chr1 (20338791-20339106)

	cki (0.660939)
	sin (0.524843)
	cte (0.29274)
	nje (0.16592)
	cje (0.165235)
	eje (0.0988338)