Ss1.1-reje01b_f2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGATCTCTTAATGAACAACTTTCCCTGACAAAACCGAAAATGGGCAATCGTCATGCCA AAGCGAAAAGTGATCAGGGTTTCGATGTTGATCGAGATGCCAAAAAGCTGCACAAAGCCT GCAAAGGAATGGGAACTGATGAAGCGGCCATCATTGAAATCCTATCAAGCAGGACATCGA ATGAGAGGCAACAAATCAAACAAAAGTACAAGGCAACATATGGCAAGGACCTGGAGGAGG TGCTCAAGAGTGAGCTGAGTGGAAACTTCGAGAAGACGGCCTTGGCCCTTCTGGACCGCC CCTGCGAGTACGCTGCCCGGCAGCTGCGGAAAGCCATGAAGGGCCTGGGGACAGACGAGT CCGTGCTCATCGAGATCCTGTGCACGAGAACCAACAAGGAAATCATCGCCATTAAAGAGG CCTACCAAAAGTTATTTGACAGGAGCCTTGAATCAGATGTCAAAAGTGATACAAGCGGAA ACCTAAAAAAAATTCTGGTCTCCTTGCTACAGGCTAATCGTGAAGAAGGAGATAACGTGG ACAAAGACCTCGCAGGTCAGGATGCCAAAGATCTGTATGATGCAGGGGAAGGCCGCTGGG GCACGGACGAGCTTGCCTTCAATGAAGTCCTGGCCCAGAGGAGTCACAAGCAGTTACGAG CCACCTTTCAAGCCTACCAAGTGCTCATTGGCAAAGATATCGAAGAGGCCATCGAGTCGG AAACGTCAGGAAATCTGAAGAAGGCCTACCTAACTCTCGTGAGAAGTGCCCGGGACCTCC AGGGCTATTTTGCCGACCGTCTGTACAAGTCCATGAAGGGCGCGGGGACCGACGAGGACA CGCTCATTGACATCATTGTGACCAGGGCTGAGGTGGACCTTCCGGCGATAAAAGCAAAGT TCCAAGAGAACTATCAGACGTCTCTCTCTGACATGGTTCGCGCAGACACCTCTGGGGACT TCCGGAAACTGCTGGTGGCCCTCTTGCACTGAAAGAAGCCAGGGCAGCTGCAGCACAGGG AGGAACCACCTTTGTCGAGAGGCCCTCCTCCCAAACCAGATTTGCAGATGCGACTCCAGC ACGAAAACCTCCCTCGGGTGCCAGTTTATTTCCTTGGCAGCTTGAGTTGTGCAGCCAGGC CAAGCTGTTTCAGTTAAGGGCAGCAGCCTCAAGACCCTTGAACAGGTCACCCCGAACGCT GGCTTAGCAAGTATCTGGGCTGCCTCTTAACTTTCCTTGAGGGTAGTAACTGAATGCTTT CTAAGCACAAATAAAATCTGCAGTTGATGAGAAAATTATGCATTCCTACTAAAACACTTA GAAGAACACGCATCACATAGGTGTATGGATGTTCTGGGTAAAGAGCAAATGATTAAAGTA CAAGAAAGACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGATCTCTTAATGAACAACTTTCCCTGACAAAACCGAAAATGGGCAATCGTCATGCCA AAGCGAAAAGTGATCAGGGTTTCGATGTTGATCGAGATGCCAAAAAGCTGCACAAAGCCT GCAAAGGAATGGGAACTGATGAAGCGGCCATCATTGAAATCCTATCAAGCAGGACATCGA ATGAGAGGCAACAAATCAAACAAAAGTACAAGGCAACATATGGCAAGGACCTGGAGGAGG TGCTCAAGAGTGAGCTGAGTGGAAACTTCGAGAAGACGGCCTTGGCCCTTCTGGACCGCC CCTGCGAGTACGCTGCCCGGCAGCTGCGGAAAGCCATGAAGGGCCTGGGGACAGACGAGT CCGTGCTCATCGAGATCCTGTGCACGAGAACCAACAAGGAAATCATCGCCATTAAAGAGG CCTACCAAAAGTTATTTGACAGGAGCCTTGAATCAGATGTCAAAAGTGATACAAGCGGAA ACCTAAAAAAAATTCTGGTCTCCTTGCTACAGGCTAATCGTGAAGAAGGAGATAACGTGG ACAAAGACCTCGCAGGTCAGGATGCCAAAGATCTGTATGATGCAGGGGAAGGCCGCTGGG GCACGGACGAGCTTGCCTTCAATGAAGTCCTGGCCCAGAGGAGTCACAAGCAGTTACGAG CCACCTTTCAAGCCTACCAAGTGCTCATTGGCAAAGATATCGAAGAGGCCATCGAGTCGG AAACGTCAGGAAATCTGAAGAAGGCCTACCTAACTCTCGTGAGAAGTGCCCGGGACCTCC AGGGCTATTTTGCCGACCGTCTGTACAAGTCCATGAAGGGCGCGGGGACCGACGAGGACA CGCTCATTGACATCATTGTGACCAGGGCTGAGGTGGACCTTCCGGCGATAAAAGCAAAGT TCCAAGAGAACTATCAGACGTCTCTCTCTGACATGGTTCGCGCAGACACCTCTGGGGACT TCCGGAAACTGCTGGTGGCCCTCTTGCACTGAAAGAAGCCAGGGCAGCTGCAGCACAGGG AGGAACCACCTTTGTCGAGAGGCCCTCCTCCCAAACCAGATTTGCAGATGCGACTCCAGC ACGAAAACCTCCCTCGGGTGCCAGTTTATTTCCTTGGCAGCTTGAGTTGTGCAGCCAGGC CAAGCTGTTTCAGTTAAGGGCAGCAGCCTCAAGACCCTTGAACAGGTCACCCCGAACGCT GGCTTAGCAAGTATCTGGGCTGCCTCTTAACTTTCCTTGAGGGTAGTAACTGAATGCTTT CTAAGCACAAATAAAATCTGCAGTTGATGAGAAAATTATGCATTCCTACTAAAACACTTA GAAGAACACGCATCACATAGGTGTATGGATGTTCTGGGTAAAGAGCAAATGATTAAAGTA CAAGAAAGACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 226-317, - strand, RNAz p=0.708684 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 226-317, - strand, RNAz p=0.708684 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 226-399, gnl|bosTau2|chr17 (7445496-7445669) | |
| 226-399, gnl|canFam2|chr13 (25013539-25013756) | |
| 226-399, gnl|danRer3|chr15 (18228867-18229066) | |
| 226-399, gnl|dasNov1|scaffold_79 (190470-190686) | |
| 226-399, gnl|echTel1|scaffold_287608 (16490-16705) | |
| 226-399, gnl|fr1|chrUn (138150412-138150599) | |
| 226-399, gnl|hg17|chr8 (124779788-124779992) | |
| 226-399, gnl|Hg17|chr8 (124779982-124779809) | |
| 226-399, gnl|loxAfr1|scaffold_16819 (27817-27604) | |
| 226-399, gnl|mm7|chr15 (58417994-58418216) | |
| 226-399, gnl|Mm7|chr15 (58418200-58418027) | |
| 226-399, gnl|monDom2|scaffold_3 (30977442-30977238) | |
| 226-399, gnl|oryCun1|scaffold_201327 (612-809) | |
| 226-399, gnl|panTro1|chr7_random (8307836-8307632) | |
| 226-399, gnl|rheMac2|chr8 (126273091-126273295) | |
| 226-399, gnl|rn3|chr7 (95124063-95124285) | |
| 226-399, gnl|tetNig1|chr6 (5632450-5632259) | |
| 226-399, gnl|xenTro1|scaffold_890 (322385-322586) | |
| 759-874, gnl|bosTau2|chr17 (7460288-7460403) | |
| 759-874, gnl|canFam2|chr13 (25001267-25001396) | |
| 759-874, gnl|danRer3|chr15 (18221846-18221972) | |
| 759-874, gnl|echTel1|scaffold_283081 (77379-77251) | |
| 759-874, gnl|fr1|chrUn (138148854-138148974) | |
| 759-874, gnl|hg17|chr8 (124766022-124766150) | |
| 759-874, gnl|Hg17|chr8 (124766144-124766029) | |
| 759-874, gnl|loxAfr1|scaffold_16819 (43390-43262) | |
| 759-874, gnl|mm7|chr15 (58410252-58410380) | |
| 759-874, gnl|Mm7|chr15 (58410374-58410259) | |
| 759-874, gnl|monDom2|scaffold_3 (31004873-31004743) | |
| 759-874, gnl|oryCun1|scaffold_135347 (15861-15991) | |
| 759-874, gnl|panTro1|chr7_random (8321863-8321735) | |
| 759-874, gnl|rheMac2|chr8 (126259105-126259233) | |
| 759-874, gnl|rn3|chr7 (95108835-95108963) | |
| 759-874, gnl|tetNig1|chr6 (5633738-5633618) | |
| 1049-1392, gnl|bosTau2|chr17 (7464002-7464344) | |
| 1049-1392, gnl|Hg17|chr8 (124762607-124762297) | |
| 1049-1392, gnl|Mm7|chr15 (58407164-58406828) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-399, gnl|bosTau2|chr17 (7445496-7445669) | |
| 226-399, gnl|canFam2|chr13 (25013539-25013756) | |
| 226-399, gnl|danRer3|chr15 (18228867-18229066) | |
| 226-399, gnl|dasNov1|scaffold_79 (190470-190686) | |
| 226-399, gnl|echTel1|scaffold_287608 (16490-16705) | |
| 226-399, gnl|fr1|chrUn (138150412-138150599) | |
| 226-399, gnl|hg17|chr8 (124779788-124779992) | |
| 226-399, gnl|Hg17|chr8 (124779982-124779809) | |
| 226-399, gnl|loxAfr1|scaffold_16819 (27817-27604) | |
| 226-399, gnl|mm7|chr15 (58417994-58418216) | |
| 226-399, gnl|Mm7|chr15 (58418200-58418027) | |
| 226-399, gnl|monDom2|scaffold_3 (30977442-30977238) | |
| 226-399, gnl|oryCun1|scaffold_201327 (612-809) | |
| 226-399, gnl|panTro1|chr7_random (8307836-8307632) | |
| 226-399, gnl|rheMac2|chr8 (126273091-126273295) | |
| 226-399, gnl|rn3|chr7 (95124063-95124285) | |
| 226-399, gnl|tetNig1|chr6 (5632450-5632259) | |
| 226-399, gnl|xenTro1|scaffold_890 (322385-322586) | |
| 759-874, gnl|bosTau2|chr17 (7460288-7460403) | |
| 759-874, gnl|canFam2|chr13 (25001267-25001396) | |
| 759-874, gnl|danRer3|chr15 (18221846-18221972) | |
| 759-874, gnl|echTel1|scaffold_283081 (77379-77251) | |
| 759-874, gnl|fr1|chrUn (138148854-138148974) | |
| 759-874, gnl|hg17|chr8 (124766022-124766150) | |
| 759-874, gnl|Hg17|chr8 (124766144-124766029) | |
| 759-874, gnl|loxAfr1|scaffold_16819 (43390-43262) | |
| 759-874, gnl|mm7|chr15 (58410252-58410380) | |
| 759-874, gnl|Mm7|chr15 (58410374-58410259) | |
| 759-874, gnl|monDom2|scaffold_3 (31004873-31004743) | |
| 759-874, gnl|oryCun1|scaffold_135347 (15861-15991) | |
| 759-874, gnl|panTro1|chr7_random (8321863-8321735) | |
| 759-874, gnl|rheMac2|chr8 (126259105-126259233) | |
| 759-874, gnl|rn3|chr7 (95108835-95108963) | |
| 759-874, gnl|tetNig1|chr6 (5633738-5633618) | |
| 1049-1392, gnl|bosTau2|chr17 (7464002-7464344) | |
| 1049-1392, gnl|Hg17|chr8 (124762607-124762297) | |
| 1049-1392, gnl|Mm7|chr15 (58407164-58406828) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| duo (0.518403) | |
| amn (0.417711) | |
| nje (0.33184) | |
| eje (0.296501) | |
| jej (0.197844) | |
| ill (0.175593) | |
| cli (0.152812) | |
| ute (0.132784) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.518403) | |
| amn (0.417711) | |
| nje (0.33184) | |
| eje (0.296501) | |
| jej (0.197844) | |
| ill (0.175593) | |
| cli (0.152812) | |
| ute (0.132784) |