Non-Coding RNA Search

Ss1.1-reje01b_g23.5

Sequence:


               
               CCCAATGGCTGAGAGAGTTAATAAAGGGCATGGAATCATCTTCAGCAATGGAAAGATATG
GAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGGGAAGAGAAG
CATTGAGGAACGCATTCAAGAGGAAGCCTGCTGCCTTGTGGAGGAGTTGAGAAAAACCAA
TGCTTCACCCTGTGATCCTACTTTCCTCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTC
CATCATTTTCCACAATCGTTTTGATTATACAGATCCAAATTTTCTTACCTTGTTGGAAAA
ATTTAATGAAAACTTCAAGATTATGAGCACCCCGTGGATGCAGGTCTGCAGTAATTTCCC
TGCTCTGATTGACTATCTCCCAGGGAGTCATAACAAAGTGCTTAAAAATTCTGCTTATGT
AAAAAGCTATATTTTGGAGAAAGTAAAAGAACATCAAGCATCCCTGGATGTTAACGACCC
TCGGGACTTCATTGATTGTTTCCTGATCAAGATGGAACAGGAAAAACACAATCACCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAATGGCTGAGAGAGTTAATAAAGGGCATGGAATCATCTTCAGCAATGGAAAGATATG
GAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGGGAAGAGAAG
CATTGAGGAACGCATTCAAGAGGAAGCCTGCTGCCTTGTGGAGGAGTTGAGAAAAACCAA
TGCTTCACCCTGTGATCCTACTTTCCTCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTC
CATCATTTTCCACAATCGTTTTGATTATACAGATCCAAATTTTCTTACCTTGTTGGAAAA
ATTTAATGAAAACTTCAAGATTATGAGCACCCCGTGGATGCAGGTCTGCAGTAATTTCCC
TGCTCTGATTGACTATCTCCCAGGGAGTCATAACAAAGTGCTTAAAAATTCTGCTTATGT
AAAAAGCTATATTTTGGAGAAAGTAAAAGAACATCAAGCATCCCTGGATGTTAACGACCC
TCGGGACTTCATTGATTGTTTCCTGATCAAGATGGAACAGGAAAAACACAATCACCAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4239655|gb|AAD13466.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4239655|gb|AAD13466.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               32-182, gnl|bosTau2|chr26 (9094547-9094397)
               

               
               32-182, gnl|Hg17|chr10 (96437871-96438021)
               

               
               32-182, gnl|Mm7|chr19 (38838909-38839059)
               


               
               342-526, gnl|bosTau2|chr26 (9085823-9085639)
               

               
               342-526, gnl|Hg17|chr10 (96456529-96456713)
               

               
               342-526, gnl|Mm7|chr19 (38842664-38842848)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-182, gnl|bosTau2|chr26 (9094547-9094397)
               

               
               32-182, gnl|Hg17|chr10 (96437871-96438021)
               

               
               32-182, gnl|Mm7|chr19 (38838909-38839059)
               


               
               342-526, gnl|bosTau2|chr26 (9085823-9085639)
               

               
               342-526, gnl|Hg17|chr10 (96456529-96456713)
               

               
               342-526, gnl|Mm7|chr19 (38842664-38842848)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.33184)
               

               
               lun (0.300978)
               

               
               cli (0.152812)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               lun (0.300978)
               

               
               cli (0.152812)
               

               
               eje (0.0988338)

	32-182, gnl\|bosTau2\|chr26 (9094547-9094397)
	32-182, gnl\|Hg17\|chr10 (96437871-96438021)
	32-182, gnl\|Mm7\|chr19 (38838909-38839059)

	342-526, gnl\|bosTau2\|chr26 (9085823-9085639)
	342-526, gnl\|Hg17\|chr10 (96456529-96456713)
	342-526, gnl\|Mm7\|chr19 (38842664-38842848)