Ss1.1-reje01b_i9.5
|
AGTCATCCACGGGGTCCTGGCTTCCAGGCACATCACCCTCCCCCTGGACGATTGGGGAGC
TTGATTTTTGCTTGTGAGAAATCAACTCTTTTTTTTTTTTTTTTTTTTTAAGCACTTGCC
TTCTACCAACCCCAGCTTGCAATCAGGTCGGGCCCCTCTCTCCTGTTCAAGGGGGTGTGG
AGGCCCCTGGGCTCTTGGTGAGAAGAGCCTGCTCCATTACATCAATGACTCTGTCATGCC
CCTCCCTGGCCCTAGACCCCAAACACATCTCCTTCTCCCCAATTTACTCTTCTCACCCCA
CCTAGGGACAGATTTCCCCCCTGCTCTTTTTGTCCTAGAAACCCCACTAGTTTGGGAAGG
TAGCGTCTGGGGTGGGGAGGGCTTCCCCTTCCCCACTGGAGGGTGTGGGTGGGGTAGGGT
GGGTGGGGGGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTCATCCACGGGGTCCTGGCTTCCAGGCACATCACCCTCCCCCTGGACGATTGGGGAGC
TTGATTTTTGCTTGTGAGAAATCAACTCTTTTTTTTTTTTTTTTTTTTTAAGCACTTGCC
TTCTACCAACCCCAGCTTGCAATCAGGTCGGGCCCCTCTCTCCTGTTCAAGGGGGTGTGG
AGGCCCCTGGGCTCTTGGTGAGAAGAGCCTGCTCCATTACATCAATGACTCTGTCATGCC
CCTCCCTGGCCCTAGACCCCAAACACATCTCCTTCTCCCCAATTTACTCTTCTCACCCCA
CCTAGGGACAGATTTCCCCCCTGCTCTTTTTGTCCTAGAAACCCCACTAGTTTGGGAAGG
TAGCGTCTGGGGTGGGGAGGGCTTCCCCTTCCCCACTGGAGGGTGTGGGTGGGGTAGGGT
GGGTGGGGGGAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
205-397, BX117945 Soares melanocyte 2NbHM Homo sapiens cDNA clone
(emb|BX117945.1|), blast E-value=0, identity=94.3% |
|
205-397, BX424333 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX424333.2|), blast E-value=0, identity=94.3% |
|
205-397, wg27g09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone
(gb|AI741447.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_7887954 NIH_MGC_71 Homo sapiens cDNA clone IMAGE
(gb|BQ428374.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_7860438 NIH_MGC_67 Homo sapiens cDNA clone IMAGE
(gb|BU165164.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_8908071 NIH_MGC_141 Homo sapiens cDNA clone IMAGE
(gb|BU589712.1|), blast E-value=0, identity=94.3% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
205-397, BX117945 Soares melanocyte 2NbHM Homo sapiens cDNA clone
(emb|BX117945.1|), blast E-value=0, identity=94.3% |
|
205-397, BX424333 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone
(emb|BX424333.2|), blast E-value=0, identity=94.3% |
|
205-397, wg27g09.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone
(gb|AI741447.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_7887954 NIH_MGC_71 Homo sapiens cDNA clone IMAGE
(gb|BQ428374.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_7860438 NIH_MGC_67 Homo sapiens cDNA clone IMAGE
(gb|BU165164.1|), blast E-value=0, identity=94.3% |
|
205-397, AGENCOURT_8908071 NIH_MGC_141 Homo sapiens cDNA clone IMAGE
(gb|BU589712.1|), blast E-value=0, identity=94.3% |
|
102-432, gnl|bosTau2|chr3 (10546903-10547229) |
|
102-432, gnl|canFam2|chr7 (44722984-44722604) |
|
102-432, gnl|echTel1|scaffold_299524 (921-1308) |
|
102-432, gnl|hg17|chr1 (152854991-152855372) |
|
102-432, gnl|Hg17|chr1 (152855499-152855148) |
|
102-432, gnl|loxAfr1|scaffold_59051 (5900-5543) |
|
102-432, gnl|mm7|chr3 (88655082-88654711) |
|
102-432, gnl|Mm7|chr3 (88654602-88654930) |
|
102-432, gnl|monDom2|scaffold_59 (1480757-1480459) |
|
102-432, gnl|oryCun1|scaffold_195642 (12584-12204) |
|
102-432, gnl|panTro1|chr1 (134799869-134800249) |
|
102-432, gnl|rheMac2|chr1 (134670046-134670432) |
|
102-432, gnl|rn3|chr2 (180606364-180606007) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
102-432, gnl|bosTau2|chr3 (10546903-10547229) |
|
102-432, gnl|canFam2|chr7 (44722984-44722604) |
|
102-432, gnl|echTel1|scaffold_299524 (921-1308) |
|
102-432, gnl|hg17|chr1 (152854991-152855372) |
|
102-432, gnl|Hg17|chr1 (152855499-152855148) |
|
102-432, gnl|loxAfr1|scaffold_59051 (5900-5543) |
|
102-432, gnl|mm7|chr3 (88655082-88654711) |
|
102-432, gnl|Mm7|chr3 (88654602-88654930) |
|
102-432, gnl|monDom2|scaffold_59 (1480757-1480459) |
|
102-432, gnl|oryCun1|scaffold_195642 (12584-12204) |
|
102-432, gnl|panTro1|chr1 (134799869-134800249) |
|
102-432, gnl|rheMac2|chr1 (134670046-134670432) |
|
102-432, gnl|rn3|chr2 (180606364-180606007) |
|
ebs (0.118301) |
|
eje (0.0988338) |
|
ebs (0.118301) |
|
eje (0.0988338) |
