Ss1.1-reje01b_j18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGACCTTCCGGCAGCTGGGCCGCGCGCTCTGAGCCGACATTGACGGGTCCTCGCGATTC GACCCGACGCGCCCACTCTAGCGACATCATGGTGGCCTACTGGCGACAGGCTGGACTCAG CTACATCCGATACTCCCAGATCTGTGCAAAGGCAGTGAGAGATGCACTGAAGGCAGAATT CAAAGCGAATGCCGAGAAGACTTCTGGCAGCAACGTTAAAATCGTGAAAGTGAAGAAGGA ATAATCTACCCTGACTACAGCTTGAAGTGCTGCGTGTTCAGTGAGGAGGTGTGGGCACGT GTCGTGGCGGATTGAAAAGGATGTCACCTGGGGAAACACACACATTCCCGTCTTGTGCAT AGATTGACAATGCCAATAAAGTGAAGCATGGTCACTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGACCTTCCGGCAGCTGGGCCGCGCGCTCTGAGCCGACATTGACGGGTCCTCGCGATTC GACCCGACGCGCCCACTCTAGCGACATCATGGTGGCCTACTGGCGACAGGCTGGACTCAG CTACATCCGATACTCCCAGATCTGTGCAAAGGCAGTGAGAGATGCACTGAAGGCAGAATT CAAAGCGAATGCCGAGAAGACTTCTGGCAGCAACGTTAAAATCGTGAAAGTGAAGAAGGA ATAATCTACCCTGACTACAGCTTGAAGTGCTGCGTGTTCAGTGAGGAGGTGTGGGCACGT GTCGTGGCGGATTGAAAAGGATGTCACCTGGGGAAACACACACATTCCCGTCTTGTGCAT AGATTGACAATGCCAATAAAGTGAAGCATGGTCACTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 6-427, gnl|bosTau2|chr22 (27207566-27207142) | |
| 6-427, gnl|Hg17|chr13 (27417343-27417726) | |
| 6-427, gnl|Mm7|chr2 (174208467-174205470) | |
| 118-247, gnl|bosTau2|chr13 (37737702-37737831) | |
| 118-247, gnl|canFam2|chr24 (46752396-46752578) | |
| 118-247, gnl|danRer3|chrNA (107395840-107396011) | |
| 118-247, gnl|dasNov1|scaffold_5834 (16352-16536) | |
| 118-247, gnl|echTel1|scaffold_115021 (446-638) | |
| 118-247, gnl|galGal2|chr20 (10404038-10403881) | |
| 118-247, gnl|hg17|chr20 (57038712-57038901) | |
| 118-247, gnl|Hg17|chr20 (57038882-57038753) | |
| 118-247, gnl|loxAfr1|scaffold_23990 (15852-15661) | |
| 118-247, gnl|mm7|chr2 (174206853-174207043) | |
| 118-247, gnl|Mm7|chr2 (174207026-174206890) | |
| 118-247, gnl|monDom2|scaffold_1 (173785372-173785534) | |
| 118-247, gnl|oryCun1|scaffold_141706 (3959-4135) | |
| 118-247, gnl|panTro1|chr21 (60033827-60034016) | |
| 118-247, gnl|rheMac2|chr10 (5496187-5495998) | |
| 118-247, gnl|rn3|chr14 (83623137-83623020) | |
| 118-247, gnl|tetNig1|chr9 (1099708-1099868) | |
| 118-247, gnl|xenTro1|scaffold_948 (8315-8181) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-427, gnl|bosTau2|chr22 (27207566-27207142) | |
| 6-427, gnl|Hg17|chr13 (27417343-27417726) | |
| 6-427, gnl|Mm7|chr2 (174208467-174205470) | |
| 118-247, gnl|bosTau2|chr13 (37737702-37737831) | |
| 118-247, gnl|canFam2|chr24 (46752396-46752578) | |
| 118-247, gnl|danRer3|chrNA (107395840-107396011) | |
| 118-247, gnl|dasNov1|scaffold_5834 (16352-16536) | |
| 118-247, gnl|echTel1|scaffold_115021 (446-638) | |
| 118-247, gnl|galGal2|chr20 (10404038-10403881) | |
| 118-247, gnl|hg17|chr20 (57038712-57038901) | |
| 118-247, gnl|Hg17|chr20 (57038882-57038753) | |
| 118-247, gnl|loxAfr1|scaffold_23990 (15852-15661) | |
| 118-247, gnl|mm7|chr2 (174206853-174207043) | |
| 118-247, gnl|Mm7|chr2 (174207026-174206890) | |
| 118-247, gnl|monDom2|scaffold_1 (173785372-173785534) | |
| 118-247, gnl|oryCun1|scaffold_141706 (3959-4135) | |
| 118-247, gnl|panTro1|chr21 (60033827-60034016) | |
| 118-247, gnl|rheMac2|chr10 (5496187-5495998) | |
| 118-247, gnl|rn3|chr14 (83623137-83623020) | |
| 118-247, gnl|tetNig1|chr9 (1099708-1099868) | |
| 118-247, gnl|xenTro1|scaffold_948 (8315-8181) |
| Expressed library(ies): 73 entry(ies) | More info |
| Expressed library(ies): 73 entry(ies) | Help | Less info |
| cje (4.62657) | |
| cki (4.2961) | |
| sto (3.23683) | |
| che (2.72628) | |
| cut (2.54885) | |
| cst (2.38062) | |
| cmu (1.86393) | |
| col (1.56006) | |
| elu (1.54143) | |
| nms (1.49701) | |
| cte (1.4637) | |
| duo (1.38241) | |
| nbm (1.29122) | |
| eje (1.28484) | |
| mas (1.26183) | |
| ton (1.2285) | |
| cbe (1.19617) | |
| nje (1.16144) | |
| nlu (1.15009) | |
| nco (1.13214) | |
| bfe (1.049) | |
| mcp (1.02389) | |
| ese (1.01202) | |
| ece (0.917221) | |
| rec (0.865351) | |
| pty (0.856287) | |
| hlv (0.835538) | |
| ebs (0.828108) | |
| fce (0.814775) | |
| nmm (0.796813) | |
| cli (0.764059) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| nca (0.684369) | |
| fhi (0.678311) | |
| vin (0.665115) | |
| tes (0.623441) | |
| sme (0.610874) | |
| eru (0.60024) | |
| jej (0.593531) | |
| fcc (0.593354) | |
| hyp (0.571347) | |
| fbs (0.526039) | |
| csp (0.483559) | |
| ecc (0.46014) | |
| eli (0.455443) | |
| amn (0.417711) | |
| ute (0.398353) | |
| cov (0.396458) | |
| nep (0.36785) | |
| fty (0.351679) | |
| med (0.348756) | |
| jca (0.34188) | |
| eye (0.341006) | |
| csk (0.281492) | |
| cga (0.279096) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cag (0.151194) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 73 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (4.62657) | |
| cki (4.2961) | |
| sto (3.23683) | |
| che (2.72628) | |
| cut (2.54885) | |
| cst (2.38062) | |
| cmu (1.86393) | |
| col (1.56006) | |
| elu (1.54143) | |
| nms (1.49701) | |
| cte (1.4637) | |
| duo (1.38241) | |
| nbm (1.29122) | |
| eje (1.28484) | |
| mas (1.26183) | |
| ton (1.2285) | |
| cbe (1.19617) | |
| nje (1.16144) | |
| nlu (1.15009) | |
| nco (1.13214) | |
| bfe (1.049) | |
| mcp (1.02389) | |
| ese (1.01202) | |
| ece (0.917221) | |
| rec (0.865351) | |
| pty (0.856287) | |
| hlv (0.835538) | |
| ebs (0.828108) | |
| fce (0.814775) | |
| nmm (0.796813) | |
| cli (0.764059) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| nca (0.684369) | |
| fhi (0.678311) | |
| vin (0.665115) | |
| tes (0.623441) | |
| sme (0.610874) | |
| eru (0.60024) | |
| jej (0.593531) | |
| fcc (0.593354) | |
| hyp (0.571347) | |
| fbs (0.526039) | |
| csp (0.483559) | |
| ecc (0.46014) | |
| eli (0.455443) | |
| amn (0.417711) | |
| ute (0.398353) | |
| cov (0.396458) | |
| nep (0.36785) | |
| fty (0.351679) | |
| med (0.348756) | |
| jca (0.34188) | |
| eye (0.341006) | |
| csk (0.281492) | |
| cga (0.279096) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| gul (0.177588) | |
| ill (0.175593) | |
| cag (0.151194) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| cty (0.10408) |