Non-Coding RNA Search

Ss1.1-reje01b_o7.5

Sequence:


               
               GAACGCGGCATGCGGTGTCCTCTGGGCGCCGGCTACGGCCACAGCCCTGCCTGGAAGACG
CTGCTTCTCACAGGCAGCCTGCTGGCATTCTGTACCGGCCCTGCCTCCTCAGAGCTGCCC
TCCTCTGCGTCTCTGGACCCCTTGACTGAAGGAGCTGATGCCCACCTGCCTGTCCCCAGA
AGCCTCGGGGATGTTCTTTCCACCTCTTGGTTCCGAGGGCACGAGGCCCGGCCAGAAGCC
ATGATCTTCTCCCCTAAGGGCTTCCCAGGGCCCGGCCACACTGGCCGGGAGACGCTGGAC
CCCCAAGGCAGCCTGATCATCAGAAACGTGACAACTCAAGACGCAGGCAGCTACACTGTG
GTGCTGGAGACCAGCAGGGGACGCAGGAGTGCGACGGAACAGATACATGTCAAGGCCAGC
TCCAGTGGGGTGCCGCTGATGACATTCCCGGGGAACAGTCAGGGTATCATCCAGAGCGAA
CTCAACTACTCGGTGATCCTGCAGTGGGTGGCTTCCATCGACCCTGAACCTGTGCTACGA
TGGACCCTCAACGGCTCGCTTTGTGGGACCGGGAAGAAAATGATTATCCAAAGGTTGTCC
TTGAAGGATCTGGGCACCTATGTATGCTTGGCAGAGAATAGTGAGGAGGTGTATTTCTCC
CAGCCTGTGACGGTCATGCTGCCACAAGCCAACGTGGAGCCCACAGACCCTGTGCCCATC
AAGCCGAACCCCACTCTCTCCCTGTCAGGAGGATCTGCCATTGCCCTCATCGTGGTCACA
TTAGTGGTGATCATGTCACTGGTCGTACTCTCGGTCTACACCTTAATCCACGACAAAAGG
TCTGACTGACAAATCGGTGAACTTTTTGGGGATTTTTTTTTTCAGTTTAAATAAATTGAA
AAAAATTTTTAAATAAATAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGCGGCATGCGGTGTCCTCTGGGCGCCGGCTACGGCCACAGCCCTGCCTGGAAGACG
CTGCTTCTCACAGGCAGCCTGCTGGCATTCTGTACCGGCCCTGCCTCCTCAGAGCTGCCC
TCCTCTGCGTCTCTGGACCCCTTGACTGAAGGAGCTGATGCCCACCTGCCTGTCCCCAGA
AGCCTCGGGGATGTTCTTTCCACCTCTTGGTTCCGAGGGCACGAGGCCCGGCCAGAAGCC
ATGATCTTCTCCCCTAAGGGCTTCCCAGGGCCCGGCCACACTGGCCGGGAGACGCTGGAC
CCCCAAGGCAGCCTGATCATCAGAAACGTGACAACTCAAGACGCAGGCAGCTACACTGTG
GTGCTGGAGACCAGCAGGGGACGCAGGAGTGCGACGGAACAGATACATGTCAAGGCCAGC
TCCAGTGGGGTGCCGCTGATGACATTCCCGGGGAACAGTCAGGGTATCATCCAGAGCGAA
CTCAACTACTCGGTGATCCTGCAGTGGGTGGCTTCCATCGACCCTGAACCTGTGCTACGA
TGGACCCTCAACGGCTCGCTTTGTGGGACCGGGAAGAAAATGATTATCCAAAGGTTGTCC
TTGAAGGATCTGGGCACCTATGTATGCTTGGCAGAGAATAGTGAGGAGGTGTATTTCTCC
CAGCCTGTGACGGTCATGCTGCCACAAGCCAACGTGGAGCCCACAGACCCTGTGCCCATC
AAGCCGAACCCCACTCTCTCCCTGTCAGGAGGATCTGCCATTGCCCTCATCGTGGTCACA
TTAGTGGTGATCATGTCACTGGTCGTACTCTCGGTCTACACCTTAATCCACGACAAAAGG
TCTGACTGACAAATCGGTGAACTTTTTGGGGATTTTTTTTTTCAGTTTAAATAAATTGAA
AAAAATTTTTAAATAAATAAATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61815269|ref|XP_580944.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815269|ref|XP_580944.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-415, gnl|bosTau2|chr6 (49212243-49211900)
               

               
               72-415, gnl|Hg17|chr19 (49813225-49813567)
               

               
               72-415, gnl|Mm7|chr7 (17627289-17626981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-415, gnl|bosTau2|chr6 (49212243-49211900)
               

               
               72-415, gnl|Hg17|chr19 (49813225-49813567)
               

               
               72-415, gnl|Mm7|chr7 (17627289-17626981)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nje (1.16144)
               

               
               cje (0.660939)
               

               
               nco (0.646935)
               

               
               eje (0.395335)
               

               
               ill (0.351185)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               ssp (0.13552)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (1.16144)
               

               
               cje (0.660939)
               

               
               nco (0.646935)
               

               
               eje (0.395335)
               

               
               ill (0.351185)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               ssp (0.13552)

	72-415, gnl\|bosTau2\|chr6 (49212243-49211900)
	72-415, gnl\|Hg17\|chr19 (49813225-49813567)
	72-415, gnl\|Mm7\|chr7 (17627289-17626981)

	nje (1.16144)
	cje (0.660939)
	nco (0.646935)
	eje (0.395335)
	ill (0.351185)
	col (0.195008)
	duo (0.172801)
	ssp (0.13552)