Non-Coding RNA Search

Ss1.1-reje02b_p15.5

Sequence:


               
               CCGCGCTGAGCCCAGTGCAGGAACATGAGACGGGCCGGCGCAGCAGCTCTGGTGAAGCAG
GCACACCTCCGGTGCCCATTGTCGTAGAGCCAGTGCGGCCTGGGGCCAAAGCAGAGGTGT
CCCAGCCCCCTGGTGTGGACTCCAAGGGGTTGCAGGAATCTGCACCCCTGTCGCCTCCTG
CACCCGAGGCCCCCCGGGGCCGGGAGCGCTGGGTGCTGGAAGTGGTGGAGGAGCGGACCA
CTCTGAGCGGGCCTCGTTCCAAACCTGTCTCTCCCAAGCTCTCCCCAGACCCCCAGACTC
CCTCCCCAGCCCCAACAAAGAATGTGCCCAGCAGTGCGGGGCTCCCAGCCCCACCTGCTT
CCCTTCTGGTCCCAACCACCAAGCCTGAGGTGGGGCTGACCTCAAGGTGCCCTGCTGAAG
CTGTGCCCCCAGCAGGCCTGACCAAAAAAGGGGCGCCCTGCCCCATGCCCCCAGGCCCAT
AGCAGAGGGAGCCGCTGGCCCTGCGCTGTACAGCCACCTGTATACATATGTACACATATA
AATAAAGTGCTTCTGTGCTGCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGCTGAGCCCAGTGCAGGAACATGAGACGGGCCGGCGCAGCAGCTCTGGTGAAGCAG
GCACACCTCCGGTGCCCATTGTCGTAGAGCCAGTGCGGCCTGGGGCCAAAGCAGAGGTGT
CCCAGCCCCCTGGTGTGGACTCCAAGGGGTTGCAGGAATCTGCACCCCTGTCGCCTCCTG
CACCCGAGGCCCCCCGGGGCCGGGAGCGCTGGGTGCTGGAAGTGGTGGAGGAGCGGACCA
CTCTGAGCGGGCCTCGTTCCAAACCTGTCTCTCCCAAGCTCTCCCCAGACCCCCAGACTC
CCTCCCCAGCCCCAACAAAGAATGTGCCCAGCAGTGCGGGGCTCCCAGCCCCACCTGCTT
CCCTTCTGGTCCCAACCACCAAGCCTGAGGTGGGGCTGACCTCAAGGTGCCCTGCTGAAG
CTGTGCCCCCAGCAGGCCTGACCAAAAAAGGGGCGCCCTGCCCCATGCCCCCAGGCCCAT
AGCAGAGGGAGCCGCTGGCCCTGCGCTGTACAGCCACCTGTATACATATGTACACATATA
AATAAAGTGCTTCTGTGCTGCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-565, - strand, RNAz p=0.999961

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-565, - strand, RNAz p=0.999961

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               211-308, + strand, RNAmicro p=0.985694
               

               
               206-308, - strand, RNAmicro p=0.977038

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               211-308, + strand, RNAmicro p=0.985694
               

               
               206-308, - strand, RNAmicro p=0.977038

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-565, gnl|bosTau2|chr7 (8539593-8540172)
               

               
               1-565, gnl|Hg17|chr19 (12846200-12846766)
               

               
               1-565, gnl|Mm7|chr8 (83498577-83498015)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-565, gnl|bosTau2|chr7 (8539593-8540172)
               

               
               1-565, gnl|Hg17|chr19 (12846200-12846766)
               

               
               1-565, gnl|Mm7|chr8 (83498577-83498015)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

	211-308, + strand, RNAmicro p=0.985694
	206-308, - strand, RNAmicro p=0.977038

	1-565, gnl\|bosTau2\|chr7 (8539593-8540172)
	1-565, gnl\|Hg17\|chr19 (12846200-12846766)
	1-565, gnl\|Mm7\|chr8 (83498577-83498015)

	fce (0.271592)
	ebs (0.236602)
	fbs (0.175346)
	hyp (0.142837)
	eje (0.0988338)