Ss1.1-reje04b_g3.5
|
CGTCTTCCTTTCCGTCTGTCGGCAGCCATCAGGTAAGCCAAGATGGGCGCGTACAAGTAC
ATCCAGGAGCTATGGAGGAAGAAGCAGTCCGACGTCATGCGCTTTCTCCTCCGGGTGCGC
TGCTGGCAGTACCGCCAGCTCTCCGCTCTCCACAGGGCCCCCCGCCCCACCCGGCCCGAT
AAGGCGCGCAGGCTGGGATACAAGGCCAAGCAAGGTTATGTCATATATCGGATTCGTGTG
CGCCGCGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGCCACCTACGGCAAGCCTGTCCAC
CATGGTGTCAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCTGTTGCCGAGGAGCGAGCT
GGACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCTACA
TACAAATTCTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCT
GACACCCAGTGGATCACCAAACCAGTCCACAAGCATAGGGAGATGCGAGGGCTGACTTCT
GCAGGCAGAAAGAGCCGCGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGT
TCCCGCCGTGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAATAA
GTAATGTTTGTAAAATTCTTACCTAATAAACAATTTAGGACATTCAAAAAAAAAAAAAAA
TGTTTTTTAATTTGTCTGTTAAAACTAGTTGTCTGCAGATTGTTTCATTGAATGCATTGT
CAAATTTTGAAAGTTAAAAGTGCAATAATGTTTGAAGATCTTAAGTGATGGTGTATCTTG
TTTCTAATAAGGGAAATGCCTTGCTTTTATTAGGGAGTTGATATGTCTGTTTAAAATGCT
GTTTGGAACAATAGGTGTAAAATTCTGTAAAAGAGGCAGAAACTAGCCGTGTAGATTTGT
TGGTGCATGTGATGAAACCTACAGCTTTATTGGGGGTGATGCAATGCTCTGCTGGTTTAC
TCTAAAAGTGGCTGATTTATGGAGTTTGGCAAGGAGAAACTAAATTTTGAATTCTCCTTT
AAAATGTGAAGGATGTCCTGATCCTTTATCATGGTCATATGCAGAAAAATAATGAAAGTT
GAGTGGGGCCCACGTTTCTTAGGCTTGATCTAATCTGTTTATATAACTGCTGCTTCAAAA
GGGAGAAATGTAAAAGAATGCAAGCATTTTTAAGAGAATTGAATAAACCTGTTGCGAGAG
GATTCTCTTAAAAATGAAAGGAATCCTGGTAAACCTAAACTGCCTTGGCCTCCATGGTAA
CCATTGAAGTTCACATAAAAGGTGGGGTTTGTGGTTTAATCCCATGACTCCGATCTGTAG
CATACTGCAAAGTAGTCATGGTATTTACACTGGTGTACATTGAAACTGATGGAAATTGAA
CATTAAATGAGATTGGGGTTACTAGCCTTAAGATTTGTAAGCTAGTAATGCTAGGTAGGA
TTGGGGAATTGGTGTCCATGAGCTATCTTTCAAATGTTGGAGGACAGGAAAAAACTTATA
TCAAAATTTTAAGTGTTTTATCTGTAGTATTAGTTTGTGACTATTATGAGCTCTCTCTAA
GCCACCTGGGGGACTGCTAAATCTAATCAGTGTTAAATCAGTGTTAAAGTTTTCTTTGGT
AAAGCCACTATCCATTCCCAAAAGGCTACTGAGAAAAGTCATGTAGTTGATGTCAATACA
AGTTCATGGTTTCCAATCTAACTTTATGTGTTGTCTACAGTTATTTTTCTAATTCCTGCT
CAAACTCCCCTTAAGATCCTCACCATTCCACACACTAGCCAGGCCATTAATTGTGCCCAC
CTTAGTGTTTGGCATACCACAACATCCTGTTGGCATTTTGTCTTCTAGTGGACTAGGCCT
CTGTCTCCCAGGGTGGATTTGAGTGTGTAGGAAATATGGAAGAGGAATCACCCCAATTCT
GTCCAGTTCTTGGTTTGCTCTCAGTAGGTAATTTTGAAATATAATGGCTGGTTTCCCTGA
ACCAATTTCTCTCATCATTTCTTCAAGAGTCTTTTAAAAGTCCCATTTCAATGGTTTCCA
GAAAACAAAGCTTGCAAAACATCTTGACATCAAAACTCTCCCAATCAAAGACAAAAAAAA
AAGTGAAGCCATGTTTTGTGTAGAGGTTCAGGTATATAAGAATAAATGTCTTACACTAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTCTTCCTTTCCGTCTGTCGGCAGCCATCAGGTAAGCCAAGATGGGCGCGTACAAGTAC
ATCCAGGAGCTATGGAGGAAGAAGCAGTCCGACGTCATGCGCTTTCTCCTCCGGGTGCGC
TGCTGGCAGTACCGCCAGCTCTCCGCTCTCCACAGGGCCCCCCGCCCCACCCGGCCCGAT
AAGGCGCGCAGGCTGGGATACAAGGCCAAGCAAGGTTATGTCATATATCGGATTCGTGTG
CGCCGCGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGCCACCTACGGCAAGCCTGTCCAC
CATGGTGTCAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCTGTTGCCGAGGAGCGAGCT
GGACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCTACA
TACAAATTCTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCT
GACACCCAGTGGATCACCAAACCAGTCCACAAGCATAGGGAGATGCGAGGGCTGACTTCT
GCAGGCAGAAAGAGCCGCGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGT
TCCCGCCGTGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAATAA
GTAATGTTTGTAAAATTCTTACCTAATAAACAATTTAGGACATTCAAAAAAAAAAAAAAA
TGTTTTTTAATTTGTCTGTTAAAACTAGTTGTCTGCAGATTGTTTCATTGAATGCATTGT
CAAATTTTGAAAGTTAAAAGTGCAATAATGTTTGAAGATCTTAAGTGATGGTGTATCTTG
TTTCTAATAAGGGAAATGCCTTGCTTTTATTAGGGAGTTGATATGTCTGTTTAAAATGCT
GTTTGGAACAATAGGTGTAAAATTCTGTAAAAGAGGCAGAAACTAGCCGTGTAGATTTGT
TGGTGCATGTGATGAAACCTACAGCTTTATTGGGGGTGATGCAATGCTCTGCTGGTTTAC
TCTAAAAGTGGCTGATTTATGGAGTTTGGCAAGGAGAAACTAAATTTTGAATTCTCCTTT
AAAATGTGAAGGATGTCCTGATCCTTTATCATGGTCATATGCAGAAAAATAATGAAAGTT
GAGTGGGGCCCACGTTTCTTAGGCTTGATCTAATCTGTTTATATAACTGCTGCTTCAAAA
GGGAGAAATGTAAAAGAATGCAAGCATTTTTAAGAGAATTGAATAAACCTGTTGCGAGAG
GATTCTCTTAAAAATGAAAGGAATCCTGGTAAACCTAAACTGCCTTGGCCTCCATGGTAA
CCATTGAAGTTCACATAAAAGGTGGGGTTTGTGGTTTAATCCCATGACTCCGATCTGTAG
CATACTGCAAAGTAGTCATGGTATTTACACTGGTGTACATTGAAACTGATGGAAATTGAA
CATTAAATGAGATTGGGGTTACTAGCCTTAAGATTTGTAAGCTAGTAATGCTAGGTAGGA
TTGGGGAATTGGTGTCCATGAGCTATCTTTCAAATGTTGGAGGACAGGAAAAAACTTATA
TCAAAATTTTAAGTGTTTTATCTGTAGTATTAGTTTGTGACTATTATGAGCTCTCTCTAA
GCCACCTGGGGGACTGCTAAATCTAATCAGTGTTAAATCAGTGTTAAAGTTTTCTTTGGT
AAAGCCACTATCCATTCCCAAAAGGCTACTGAGAAAAGTCATGTAGTTGATGTCAATACA
AGTTCATGGTTTCCAATCTAACTTTATGTGTTGTCTACAGTTATTTTTCTAATTCCTGCT
CAAACTCCCCTTAAGATCCTCACCATTCCACACACTAGCCAGGCCATTAATTGTGCCCAC
CTTAGTGTTTGGCATACCACAACATCCTGTTGGCATTTTGTCTTCTAGTGGACTAGGCCT
CTGTCTCCCAGGGTGGATTTGAGTGTGTAGGAAATATGGAAGAGGAATCACCCCAATTCT
GTCCAGTTCTTGGTTTGCTCTCAGTAGGTAATTTTGAAATATAATGGCTGGTTTCCCTGA
ACCAATTTCTCTCATCATTTCTTCAAGAGTCTTTTAAAAGTCCCATTTCAATGGTTTCCA
GAAAACAAAGCTTGCAAAACATCTTGACATCAAAACTCTCCCAATCAAAGACAAAAAAAA
AAGTGAAGCCATGTTTTGTGTAGAGGTTCAGGTATATAAGAATAAATGTCTTACACTAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-826, gnl|bosTau2|chr1 (79888191-79889025) |
|
3-826, gnl|Hg17|chr3 (159476948-159476154) |
|
3-826, gnl|Mm7|chr4 (104954735-104955531) |
| |
|
161-796, gnl|bosTau2|chr18 (38922703-38922074) |
|
161-796, gnl|Hg17|chr3 (159476782-159476195) |
|
161-796, gnl|Mm7|chr4 (104954903-104955506) |
| |
|
206-705, gnl|bosTau2|chr14 (45293799-45294284) |
|
206-705, gnl|Hg17|chr6 (12622491-12622992) |
|
206-705, gnl|Mm7|chr7 (14902892-14902397) |
| |
|
1031-1609, gnl|bosTau2|chr18 (38921706-38921134) |
| |
|
1700-2232, gnl|bosTau2|chr18 (38920865-38920345) |
|
1700-2232, gnl|Hg17|chr3 (159475372-159474864) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-826, gnl|bosTau2|chr1 (79888191-79889025) |
|
3-826, gnl|Hg17|chr3 (159476948-159476154) |
|
3-826, gnl|Mm7|chr4 (104954735-104955531) |
| |
|
161-796, gnl|bosTau2|chr18 (38922703-38922074) |
|
161-796, gnl|Hg17|chr3 (159476782-159476195) |
|
161-796, gnl|Mm7|chr4 (104954903-104955506) |
| |
|
206-705, gnl|bosTau2|chr14 (45293799-45294284) |
|
206-705, gnl|Hg17|chr6 (12622491-12622992) |
|
206-705, gnl|Mm7|chr7 (14902892-14902397) |
| |
|
1031-1609, gnl|bosTau2|chr18 (38921706-38921134) |
| |
|
1700-2232, gnl|bosTau2|chr18 (38920865-38920345) |
|
1700-2232, gnl|Hg17|chr3 (159475372-159474864) |
|
fty (4.74767) |
|
elu (4.62428) |
|
cly (4.10182) |
|
ese (3.66856) |
|
cag (3.32628) |
|
med (3.25506) |
|
eje (3.16268) |
|
eep (3.0641) |
|
nlu (2.68353) |
|
nep (2.57495) |
|
nca (2.46373) |
|
ton (2.2815) |
|
lnt (2.27693) |
|
ecc (2.18567) |
|
ece (2.06375) |
|
eye (2.04604) |
|
nje (1.99104) |
|
nco (1.94081) |
|
ill (1.93152) |
|
pty (1.85529) |
|
ebs (1.77452) |
|
csp (1.77305) |
|
cov (1.71799) |
|
cga (1.67457) |
|
duo (1.55521) |
|
pro (1.5361) |
|
hlv (1.53182) |
|
jca (1.48148) |
|
mcp (1.36519) |
|
fce (1.35796) |
|
nmm (1.32802) |
|
bla (1.24347) |
|
fli (1.21729) |
|
eli (1.21451) |
|
col (1.17005) |
|
sug (1.14562) |
|
eru (1.08043) |
|
thg (1.01433) |
|
hyp (0.999857) |
|
aor (0.976372) |
|
pgl (0.947867) |
|
fbs (0.876732) |
|
mas (0.84122) |
|
amn (0.835422) |
|
cje (0.826173) |
|
fcc (0.791139) |
|
ski (0.733676) |
|
cty (0.72856) |
|
cst (0.700182) |
|
nbm (0.695272) |
|
mgp (0.692042) |
|
mga (0.64082) |
|
tbr (0.616713) |
|
jej (0.593531) |
|
sag (0.548145) |
|
ste (0.540833) |
|
lyg (0.532411) |
|
sin (0.524843) |
|
ova (0.516529) |
|
cut (0.509771) |
|
fhi (0.508733) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
spc (0.453463) |
|
lun (0.451467) |
|
spl (0.429553) |
|
csk (0.422238) |
|
che (0.408942) |
|
ssp (0.406559) |
|
sto (0.359648) |
|
clu (0.358938) |
|
gul (0.355177) |
|
rec (0.346141) |
|
fco (0.314416) |
|
cli (0.305623) |
|
fat (0.294855) |
|
liv (0.292569) |
|
pla (0.267344) |
|
ute (0.265569) |
|
kid (0.259471) |
|
tra (0.246184) |
|
pan (0.23596) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
cbl (0.114797) |
|
fty (4.74767) |
|
elu (4.62428) |
|
cly (4.10182) |
|
ese (3.66856) |
|
cag (3.32628) |
|
med (3.25506) |
|
eje (3.16268) |
|
eep (3.0641) |
|
nlu (2.68353) |
|
nep (2.57495) |
|
nca (2.46373) |
|
ton (2.2815) |
|
lnt (2.27693) |
|
ecc (2.18567) |
|
ece (2.06375) |
|
eye (2.04604) |
|
nje (1.99104) |
|
nco (1.94081) |
|
ill (1.93152) |
|
pty (1.85529) |
|
ebs (1.77452) |
|
csp (1.77305) |
|
cov (1.71799) |
|
cga (1.67457) |
|
duo (1.55521) |
|
pro (1.5361) |
|
hlv (1.53182) |
|
jca (1.48148) |
|
mcp (1.36519) |
|
fce (1.35796) |
|
nmm (1.32802) |
|
bla (1.24347) |
|
fli (1.21729) |
|
eli (1.21451) |
|
col (1.17005) |
|
sug (1.14562) |
|
eru (1.08043) |
|
thg (1.01433) |
|
hyp (0.999857) |
|
aor (0.976372) |
|
pgl (0.947867) |
|
fbs (0.876732) |
|
mas (0.84122) |
|
amn (0.835422) |
|
cje (0.826173) |
|
fcc (0.791139) |
|
ski (0.733676) |
|
cty (0.72856) |
|
cst (0.700182) |
|
nbm (0.695272) |
|
mgp (0.692042) |
|
mga (0.64082) |
|
tbr (0.616713) |
|
jej (0.593531) |
|
sag (0.548145) |
|
ste (0.540833) |
|
lyg (0.532411) |
|
sin (0.524843) |
|
ova (0.516529) |
|
cut (0.509771) |
|
fhi (0.508733) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
spc (0.453463) |
|
lun (0.451467) |
|
spl (0.429553) |
|
csk (0.422238) |
|
che (0.408942) |
|
ssp (0.406559) |
|
sto (0.359648) |
|
clu (0.358938) |
|
gul (0.355177) |
|
rec (0.346141) |
|
fco (0.314416) |
|
cli (0.305623) |
|
fat (0.294855) |
|
liv (0.292569) |
|
pla (0.267344) |
|
ute (0.265569) |
|
kid (0.259471) |
|
tra (0.246184) |
|
pan (0.23596) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
cbl (0.114797) |
