Non-Coding RNA Search

Ss1.1-reje04b_p15.5.5

Sequence:


               
               GGATATTTTCGTTTCCTTTTGCTAAGCAGACATCTGGAATTCAAGGTGCTGATAGTGACC
TCGGCTCCTTTTTCTAGTCACAGATCTCATGCTAGTGAATCCAAGAGCATCAGCCTTTTT
GAACAGGACCTAGATTTTTCTTCCTGCCAACCCAAAACTAAAATAATTTCAGTGTTGATT
CAGAAATGAGCACTAAGAAGGCCCTGACCCTGCAATTGGCCGCTTGAGTAGTTTGGGGTT
TTTGGGGGGTTTGTTTTGTTTTTAAGGTGGGCATTCTCCTTTAACCTCTACTTTTTTCAA
AAGAAACAAAACATCCTTACCTGGGTTTCCTCTGAGCTTCTCTTCTCTGTCCCTGAAGTG
GCCAAAAACAAATCCTGGAGCATGAACAAAAAAAAGTGTAAACTAGGAAGGCTTGTGATG
CTCAAAATAACTGCCAAGCAATATCTTGGGGCTTGATAATGGATGTTGTGGGCTTTCTTC
TTGCCTCTCCCCCATCCTTTAAAGAAAAAACTTATTTTTGAAAAGTATACGCAGATACCT
GATTTGGGCTTTTCTATCATACTAACTGGCAAGAATACCACTTTCATTGTGTTTTATAAC
CCATTTGTTCCCCCAAACTCACCCCTTTGTTTCCCCTAGTTTCTTTGTTGTCCCCTTTTA
CCTGCCTTGTGTGTTGAATGCCAGAAAGTCAAAGGCTGTACAGCAATTTTCTGCATGTCT
GTCTATTATTTTTCTATGTCTAACTCTTGGATGAAGTATGTCTAGGTAGCCGGCTACTCC
TGATTTTAAAAAAATCCTTCCTGAGAGAAGACGACCCAAAGACTCTTGCAGATGAGGTGG
TTTTTCTCATTCTACATGATCAGATGTCTGTAGATTGTGGGAAGTTTTGTTCTCAAAGAT
AGGTGGGGATGGGGGCGGGGTGCAATATGTGATTTATCATGACTTTTTCATTAACACTTA
TTACCTGGATGATTTTCTTACCCTATGTTCTTCTGAAAGAAGAAATAATTGCCTGGCACT
GCTAGAGTCAGCTATTGAACGGCTGAAGAAATTGAGTGTCTTCTCAAAATTGTAAAACAA
GAATTAGGAAAACACTCGCTGCTGAGAGTTCTCCAGATTTTAAGTTTTGATTTCTGATTC
GATCTGGGGGGAGCGAGTGCAGAGGATTGAGAGGGCTTTTTTCATTTTAGCTTTTACCAG
AGAACCAAGCTTGCCTTGACCCCTTGTCCTTAGAATCGGTGCTCTGGGAATGTTGCTGTT
AGCCATCAGTGTTGGGGGCCATCTTCCTAATGGTAAACACAGCCTAAACAGGGGAGCAGC
AGAGAAGGGAGTATGAAATTCTGTCTCCAGATGTTTCTTTGTGTAAATATGTTGCCAATG
TAAAGCCTGTGTCAAGACATAGAGAATGGTGCTTTTTACTATAGTTGGTACATGCATTTT
TAGAACTACTCCGCGTTTTAGAGAACCTTTGCTGTGTATATGTAAACTTCTTGTATTGTT
CAACTGTTAACAAATAATAAATTATTTCATTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATATTTTCGTTTCCTTTTGCTAAGCAGACATCTGGAATTCAAGGTGCTGATAGTGACC
TCGGCTCCTTTTTCTAGTCACAGATCTCATGCTAGTGAATCCAAGAGCATCAGCCTTTTT
GAACAGGACCTAGATTTTTCTTCCTGCCAACCCAAAACTAAAATAATTTCAGTGTTGATT
CAGAAATGAGCACTAAGAAGGCCCTGACCCTGCAATTGGCCGCTTGAGTAGTTTGGGGTT
TTTGGGGGGTTTGTTTTGTTTTTAAGGTGGGCATTCTCCTTTAACCTCTACTTTTTTCAA
AAGAAACAAAACATCCTTACCTGGGTTTCCTCTGAGCTTCTCTTCTCTGTCCCTGAAGTG
GCCAAAAACAAATCCTGGAGCATGAACAAAAAAAAGTGTAAACTAGGAAGGCTTGTGATG
CTCAAAATAACTGCCAAGCAATATCTTGGGGCTTGATAATGGATGTTGTGGGCTTTCTTC
TTGCCTCTCCCCCATCCTTTAAAGAAAAAACTTATTTTTGAAAAGTATACGCAGATACCT
GATTTGGGCTTTTCTATCATACTAACTGGCAAGAATACCACTTTCATTGTGTTTTATAAC
CCATTTGTTCCCCCAAACTCACCCCTTTGTTTCCCCTAGTTTCTTTGTTGTCCCCTTTTA
CCTGCCTTGTGTGTTGAATGCCAGAAAGTCAAAGGCTGTACAGCAATTTTCTGCATGTCT
GTCTATTATTTTTCTATGTCTAACTCTTGGATGAAGTATGTCTAGGTAGCCGGCTACTCC
TGATTTTAAAAAAATCCTTCCTGAGAGAAGACGACCCAAAGACTCTTGCAGATGAGGTGG
TTTTTCTCATTCTACATGATCAGATGTCTGTAGATTGTGGGAAGTTTTGTTCTCAAAGAT
AGGTGGGGATGGGGGCGGGGTGCAATATGTGATTTATCATGACTTTTTCATTAACACTTA
TTACCTGGATGATTTTCTTACCCTATGTTCTTCTGAAAGAAGAAATAATTGCCTGGCACT
GCTAGAGTCAGCTATTGAACGGCTGAAGAAATTGAGTGTCTTCTCAAAATTGTAAAACAA
GAATTAGGAAAACACTCGCTGCTGAGAGTTCTCCAGATTTTAAGTTTTGATTTCTGATTC
GATCTGGGGGGAGCGAGTGCAGAGGATTGAGAGGGCTTTTTTCATTTTAGCTTTTACCAG
AGAACCAAGCTTGCCTTGACCCCTTGTCCTTAGAATCGGTGCTCTGGGAATGTTGCTGTT
AGCCATCAGTGTTGGGGGCCATCTTCCTAATGGTAAACACAGCCTAAACAGGGGAGCAGC
AGAGAAGGGAGTATGAAATTCTGTCTCCAGATGTTTCTTTGTGTAAATATGTTGCCAATG
TAAAGCCTGTGTCAAGACATAGAGAATGGTGCTTTTTACTATAGTTGGTACATGCATTTT
TAGAACTACTCCGCGTTTTAGAGAACCTTTGCTGTGTATATGTAAACTTCTTGTATTGTT
CAACTGTTAACAAATAATAAATTATTTCATTATTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               794-913, - strand, RNAz p=0.930675

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               794-913, - strand, RNAz p=0.930675

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1536, gnl|bosTau2|chr11 (48355195-48353670)
               

               
               1-1536, gnl|Hg17|chr2 (70080111-70081723)
               

               
               1-1536, gnl|Mm7|chr6 (86723501-86722131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1536, gnl|bosTau2|chr11 (48355195-48353670)
               

               
               1-1536, gnl|Hg17|chr2 (70080111-70081723)
               

               
               1-1536, gnl|Mm7|chr6 (86723501-86722131)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbl (1.14797)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.14797)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-1536, gnl\|bosTau2\|chr11 (48355195-48353670)
	1-1536, gnl\|Hg17\|chr2 (70080111-70081723)
	1-1536, gnl\|Mm7\|chr6 (86723501-86722131)

	cbl (1.14797)
	aor (0.195274)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	lin (0.145603)
	nmm (0.132802)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)