Non-Coding RNA Search

Ss1.1-reje07b_g23.5

Sequence:


               
               CAGCTTTTCAGAGCTCAGCAGATCAGACTTAAATTCATTAAAGATGGCTTGGAAGACCAG
CGGCCTAATGCAGATGTGCAGATTTCTTCTCTTAGTGATTTTATTTCTGCCACACGAGAT
GACAAGTTCTGTTTTAACTGTGAATGGGAAAACTGAAAACTATATCCTGGACACTGAGCT
TGGCTTTGAAGAGTCTCTGAAATGTGCTGTTCAAAACCACACCAGAGAGGAAGAACTTCT
TTGGTACCGAGGAGAGGGGAGAGTGGATCTGAAATCAGGAAACAAAATCAATTCCAGCTC
TGTCTGTGTCACCTCCATCAGTGAAAATGACAATGGCATCACCTTTACCTGCAAGCTGCA
GAAGAATCAGTCGGTGTCCATCTCAGTGGTGCTGAATGTCACCTTTCCCCCGCTCCTAAG
TGGAAACGACCTCCAAACAGCTGAGGAAGGCAATGATGTGAAGTTGGTCTGCAATGTGAA
ATCCAACCCCCAGGCTCAAATGACGTGGTACAAAGACGGGAGCATCTTGAATTTAGAGAA
AGACCATCACCAGATCCAACAGACAAGTGAATATCTCCAATTGTCGATCACTAAAGTCAA
GAAATCTGACAATGGAACCTACAGCTGTACTGCAATTACATTTACAGAAAGGAAGACCAA
GGACTTTCACCTCATTGTCAAAGATAAAGCTGTGACTATACCAATAGAACCCATTGTTGC
TGCATGTATTGTGGTCTTTCTGACATTGTGCTTTGGACTACTTGCTCGAAGAAAAAGAAT
AATGAAGCTGTGCATAAAGGATAAAGCTCCTCAAAACGGAACAGCTCTATGAGAAAGCTC
AGATGCCATCTAATACGGCAGGAATTTTACATCAGGACCTCCCTGATTTATGAAGTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTTTTCAGAGCTCAGCAGATCAGACTTAAATTCATTAAAGATGGCTTGGAAGACCAG
CGGCCTAATGCAGATGTGCAGATTTCTTCTCTTAGTGATTTTATTTCTGCCACACGAGAT
GACAAGTTCTGTTTTAACTGTGAATGGGAAAACTGAAAACTATATCCTGGACACTGAGCT
TGGCTTTGAAGAGTCTCTGAAATGTGCTGTTCAAAACCACACCAGAGAGGAAGAACTTCT
TTGGTACCGAGGAGAGGGGAGAGTGGATCTGAAATCAGGAAACAAAATCAATTCCAGCTC
TGTCTGTGTCACCTCCATCAGTGAAAATGACAATGGCATCACCTTTACCTGCAAGCTGCA
GAAGAATCAGTCGGTGTCCATCTCAGTGGTGCTGAATGTCACCTTTCCCCCGCTCCTAAG
TGGAAACGACCTCCAAACAGCTGAGGAAGGCAATGATGTGAAGTTGGTCTGCAATGTGAA
ATCCAACCCCCAGGCTCAAATGACGTGGTACAAAGACGGGAGCATCTTGAATTTAGAGAA
AGACCATCACCAGATCCAACAGACAAGTGAATATCTCCAATTGTCGATCACTAAAGTCAA
GAAATCTGACAATGGAACCTACAGCTGTACTGCAATTACATTTACAGAAAGGAAGACCAA
GGACTTTCACCTCATTGTCAAAGATAAAGCTGTGACTATACCAATAGAACCCATTGTTGC
TGCATGTATTGTGGTCTTTCTGACATTGTGCTTTGGACTACTTGCTCGAAGAAAAAGAAT
AATGAAGCTGTGCATAAAGGATAAAGCTCCTCAAAACGGAACAGCTCTATGAGAAAGCTC
AGATGCCATCTAATACGGCAGGAATTTTACATCAGGACCTCCCTGATTTATGAAGTCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37181414|gb|AAQ88520.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37181414|gb|AAQ88520.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               202-321, + strand, RNAz p=0.578039
               

               
               225-343, - strand, RNAz p=0.972801

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-321, + strand, RNAz p=0.578039
               

               
               225-343, - strand, RNAz p=0.972801

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               123-402, gnl|bosTau2|chr19 (15846466-15846187)
               

               
               123-402, gnl|canFam2|chr9 (47672851-47673179)
               

               
               123-402, gnl|dasNov1|scaffold_4661 (59973-60305)
               

               
               123-402, gnl|echTel1|scaffold_249304 (6221-6552)
               

               
               123-402, gnl|galGal2|chr19 (5822085-5822421)
               

               
               123-402, gnl|hg17|chr17 (25680377-25680710)
               

               
               123-402, gnl|Hg17|chr17 (25680676-25680397)
               

               
               123-402, gnl|mm7|chr11 (76988786-76988452)
               

               
               123-402, gnl|Mm7|chr11 (76988485-76988764)
               

               
               123-402, gnl|monDom2|scaffold_86 (753905-754240)
               

               
               123-402, gnl|oryCun1|scaffold_204493 (34332-34000)
               

               
               123-402, gnl|panTro1|chr19 (29045736-29046069)
               

               
               123-402, gnl|rheMac2|chr16 (25570651-25570984)
               

               
               123-402, gnl|rn3|chr10 (67283527-67283858)
               


               
               405-687, gnl|bosTau2|chr19 (15841324-15841045)
               

               
               405-687, gnl|Hg17|chr17 (25676238-25675956)
               

               
               405-687, gnl|Mm7|chr11 (76991622-76991904)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-402, gnl|bosTau2|chr19 (15846466-15846187)
               

               
               123-402, gnl|canFam2|chr9 (47672851-47673179)
               

               
               123-402, gnl|dasNov1|scaffold_4661 (59973-60305)
               

               
               123-402, gnl|echTel1|scaffold_249304 (6221-6552)
               

               
               123-402, gnl|galGal2|chr19 (5822085-5822421)
               

               
               123-402, gnl|hg17|chr17 (25680377-25680710)
               

               
               123-402, gnl|Hg17|chr17 (25680676-25680397)
               

               
               123-402, gnl|mm7|chr11 (76988786-76988452)
               

               
               123-402, gnl|Mm7|chr11 (76988485-76988764)
               

               
               123-402, gnl|monDom2|scaffold_86 (753905-754240)
               

               
               123-402, gnl|oryCun1|scaffold_204493 (34332-34000)
               

               
               123-402, gnl|panTro1|chr19 (29045736-29046069)
               

               
               123-402, gnl|rheMac2|chr16 (25570651-25570984)
               

               
               123-402, gnl|rn3|chr10 (67283527-67283858)
               


               
               405-687, gnl|bosTau2|chr19 (15841324-15841045)
               

               
               405-687, gnl|Hg17|chr17 (25676238-25675956)
               

               
               405-687, gnl|Mm7|chr11 (76991622-76991904)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ill (0.526778)
               

               
               nco (0.323468)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               nco (0.323468)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	202-321, + strand, RNAz p=0.578039
	225-343, - strand, RNAz p=0.972801

	123-402, gnl\|bosTau2\|chr19 (15846466-15846187)
	123-402, gnl\|canFam2\|chr9 (47672851-47673179)
	123-402, gnl\|dasNov1\|scaffold_4661 (59973-60305)
	123-402, gnl\|echTel1\|scaffold_249304 (6221-6552)
	123-402, gnl\|galGal2\|chr19 (5822085-5822421)
	123-402, gnl\|hg17\|chr17 (25680377-25680710)
	123-402, gnl\|Hg17\|chr17 (25680676-25680397)
	123-402, gnl\|mm7\|chr11 (76988786-76988452)
	123-402, gnl\|Mm7\|chr11 (76988485-76988764)
	123-402, gnl\|monDom2\|scaffold_86 (753905-754240)
	123-402, gnl\|oryCun1\|scaffold_204493 (34332-34000)
	123-402, gnl\|panTro1\|chr19 (29045736-29046069)
	123-402, gnl\|rheMac2\|chr16 (25570651-25570984)
	123-402, gnl\|rn3\|chr10 (67283527-67283858)

	405-687, gnl\|bosTau2\|chr19 (15841324-15841045)
	405-687, gnl\|Hg17\|chr17 (25676238-25675956)
	405-687, gnl\|Mm7\|chr11 (76991622-76991904)

	ill (0.526778)
	nco (0.323468)
	sin (0.174948)
	lin (0.145603)
	kid (0.129735)
	jej (0.0989218)
	eje (0.0988338)