Non-Coding RNA Search

Ss1.1-reje07b_l4.5

Sequence:


               
               TGTGTGTGTTCCGTGACCCTCTCGGGAAGATGATGAACGGGACGCGTAGCTGGTGTACAC
TGGTGGACGTGCACCCGGAAGCGCAGACCTCGGGCAGCGTGGATATTCTCAGGCTGACTC
TCCAGAGTGAACTGACAGGAGATGAACTTGAACGAATAGCTCAGAAGGCGGGCAGGAAGA
CGTATGCCATGGTGTCTGGCCGCTCAACTGGGCATTCTCTGGCCTCAGAACTGGTGGAGT
CCAACGATGGACACGAAGAGATCATTAAGGTGTACTTAAAGGGGAGGTCTGGAGACAAGA
TGATCCATGAGAAGAATATTAACCAGCTGAAGAGTGAGGTCCAATATATCCAGGAGGCCA
GGAATTCCCTGCAGAAGCTCCGGGAGGATATAAGTAGCAAGCTCGACAAGGATCCAGGAG
CTTCTCTCCATCAACAGGAGATACAGGTAGTGCTAGAAAAGCCCAATGGCTTTAGTTCAA
GTCCCTCGACTCCACCTCCGCCTCCGAATAGCAGAACACCTGAGGTGGACACCTTTGTAA
ATGAAGATGTTGAGAGCTTGAGGAAGACTGTGCAGGACTTGCTTGTCCAACTGCAGGAGG
CTGAGCGCCAGCACCAGTCAGAGCGTGTAGATTTTGAGGCCACACTCAGCCGGTACCAGA
GGGAAGCAGAGCAGAGTCACGTGGCCCTTCAGCGAGCGGAGGACCGAGTGGAGCAGAAGG
AGGCGGAAGTCGAGGAGCTGCAGAAGCGCTTGCTGGGGATGGAGACGGAGCATCAGGCGT
TACTGGCGAAGGTCAGGGAAGGGGAGACAGCCCTGGAGGAACTGCGGGGCAAGAACAGCG
ACTGCCGAGCAGAACAAGAAAAGGCTGCTAACCTGGAAAAAGAAGTGGCTGGATTGCGGG
AGAAGATCCACCACTTGGATGACATGCTTAAGAGCCAGCAGCGGAAAGTCCGACAAATGA
TAGAGCAGCTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGACACTGCCATCCAGGAAC
TCAAGGGGAAAATTGCCTACCTGGAAGCTGAGAATTTAGAGATGCATGACCGAATGGAAC
ACTTGATAGAAAAACAATCAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGTTCCGTGACCCTCTCGGGAAGATGATGAACGGGACGCGTAGCTGGTGTACAC
TGGTGGACGTGCACCCGGAAGCGCAGACCTCGGGCAGCGTGGATATTCTCAGGCTGACTC
TCCAGAGTGAACTGACAGGAGATGAACTTGAACGAATAGCTCAGAAGGCGGGCAGGAAGA
CGTATGCCATGGTGTCTGGCCGCTCAACTGGGCATTCTCTGGCCTCAGAACTGGTGGAGT
CCAACGATGGACACGAAGAGATCATTAAGGTGTACTTAAAGGGGAGGTCTGGAGACAAGA
TGATCCATGAGAAGAATATTAACCAGCTGAAGAGTGAGGTCCAATATATCCAGGAGGCCA
GGAATTCCCTGCAGAAGCTCCGGGAGGATATAAGTAGCAAGCTCGACAAGGATCCAGGAG
CTTCTCTCCATCAACAGGAGATACAGGTAGTGCTAGAAAAGCCCAATGGCTTTAGTTCAA
GTCCCTCGACTCCACCTCCGCCTCCGAATAGCAGAACACCTGAGGTGGACACCTTTGTAA
ATGAAGATGTTGAGAGCTTGAGGAAGACTGTGCAGGACTTGCTTGTCCAACTGCAGGAGG
CTGAGCGCCAGCACCAGTCAGAGCGTGTAGATTTTGAGGCCACACTCAGCCGGTACCAGA
GGGAAGCAGAGCAGAGTCACGTGGCCCTTCAGCGAGCGGAGGACCGAGTGGAGCAGAAGG
AGGCGGAAGTCGAGGAGCTGCAGAAGCGCTTGCTGGGGATGGAGACGGAGCATCAGGCGT
TACTGGCGAAGGTCAGGGAAGGGGAGACAGCCCTGGAGGAACTGCGGGGCAAGAACAGCG
ACTGCCGAGCAGAACAAGAAAAGGCTGCTAACCTGGAAAAAGAAGTGGCTGGATTGCGGG
AGAAGATCCACCACTTGGATGACATGCTTAAGAGCCAGCAGCGGAAAGTCCGACAAATGA
TAGAGCAGCTCCAGAATTCAAAAGCTGTGATCCAGTCAAAGGACACTGCCATCCAGGAAC
TCAAGGGGAAAATTGCCTACCTGGAAGCTGAGAATTTAGAGATGCATGACCGAATGGAAC
ACTTGATAGAAAAACAATCAGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4103950|gb|AAD01896.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4103950|gb|AAD01896.1|

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               166-278, gnl|bosTau2|chr3 (11533910-11533798)
               

               
               166-278, gnl|canFam2|chr17 (63684260-63684754)
               

               
               166-278, gnl|dasNov1|scaffold_7715 (85777-85295)
               

               
               166-278, gnl|echTel1|scaffold_219845 (4770-5250)
               

               
               166-278, gnl|hg17|chr1 (148347759-148348270)
               

               
               166-278, gnl|Hg17|chr1 (148348132-148348244)
               

               
               166-278, gnl|loxAfr1|scaffold_43046 (22934-22454)
               

               
               166-278, gnl|mm7|chr3 (94513302-94512844)
               

               
               166-278, gnl|Mm7|chr3 (94512977-94512865)
               

               
               166-278, gnl|monDom2|scaffold_44 (4833238-4833836)
               

               
               166-278, gnl|oryCun1|scaffold_163709 (4212-4693)
               

               
               166-278, gnl|panTro1|chr1 (130099738-130100245)
               

               
               166-278, gnl|rheMac2|chr1 (129998787-129999290)
               

               
               166-278, gnl|rn3|chr2 (189574908-189574448)
               


               
               637-768, gnl|bosTau2|chr3 (15240801-15240932)
               

               
               637-768, gnl|Hg17|chr1 (148359817-148359948)
               

               
               637-768, gnl|Mm7|chr3 (94496767-94496636)
               


               
               863-968, gnl|bosTau2|chr3 (15243867-15243972)
               

               
               863-968, gnl|Hg17|chr1 (148364270-148364375)
               

               
               863-968, gnl|Mm7|chr3 (94490676-94490571)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-278, gnl|bosTau2|chr3 (11533910-11533798)
               

               
               166-278, gnl|canFam2|chr17 (63684260-63684754)
               

               
               166-278, gnl|dasNov1|scaffold_7715 (85777-85295)
               

               
               166-278, gnl|echTel1|scaffold_219845 (4770-5250)
               

               
               166-278, gnl|hg17|chr1 (148347759-148348270)
               

               
               166-278, gnl|Hg17|chr1 (148348132-148348244)
               

               
               166-278, gnl|loxAfr1|scaffold_43046 (22934-22454)
               

               
               166-278, gnl|mm7|chr3 (94513302-94512844)
               

               
               166-278, gnl|Mm7|chr3 (94512977-94512865)
               

               
               166-278, gnl|monDom2|scaffold_44 (4833238-4833836)
               

               
               166-278, gnl|oryCun1|scaffold_163709 (4212-4693)
               

               
               166-278, gnl|panTro1|chr1 (130099738-130100245)
               

               
               166-278, gnl|rheMac2|chr1 (129998787-129999290)
               

               
               166-278, gnl|rn3|chr2 (189574908-189574448)
               


               
               637-768, gnl|bosTau2|chr3 (15240801-15240932)
               

               
               637-768, gnl|Hg17|chr1 (148359817-148359948)
               

               
               637-768, gnl|Mm7|chr3 (94496767-94496636)
               


               
               863-968, gnl|bosTau2|chr3 (15243867-15243972)
               

               
               863-968, gnl|Hg17|chr1 (148364270-148364375)
               

               
               863-968, gnl|Mm7|chr3 (94490676-94490571)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	166-278, gnl\|bosTau2\|chr3 (11533910-11533798)
	166-278, gnl\|canFam2\|chr17 (63684260-63684754)
	166-278, gnl\|dasNov1\|scaffold_7715 (85777-85295)
	166-278, gnl\|echTel1\|scaffold_219845 (4770-5250)
	166-278, gnl\|hg17\|chr1 (148347759-148348270)
	166-278, gnl\|Hg17\|chr1 (148348132-148348244)
	166-278, gnl\|loxAfr1\|scaffold_43046 (22934-22454)
	166-278, gnl\|mm7\|chr3 (94513302-94512844)
	166-278, gnl\|Mm7\|chr3 (94512977-94512865)
	166-278, gnl\|monDom2\|scaffold_44 (4833238-4833836)
	166-278, gnl\|oryCun1\|scaffold_163709 (4212-4693)
	166-278, gnl\|panTro1\|chr1 (130099738-130100245)
	166-278, gnl\|rheMac2\|chr1 (129998787-129999290)
	166-278, gnl\|rn3\|chr2 (189574908-189574448)

	637-768, gnl\|bosTau2\|chr3 (15240801-15240932)
	637-768, gnl\|Hg17\|chr1 (148359817-148359948)
	637-768, gnl\|Mm7\|chr3 (94496767-94496636)

	863-968, gnl\|bosTau2\|chr3 (15243867-15243972)
	863-968, gnl\|Hg17\|chr1 (148364270-148364375)
	863-968, gnl\|Mm7\|chr3 (94490676-94490571)