Non-Coding RNA Search

Ss1.1-reje08b_h24.5

Sequence:


               
               TCGCGACATCTAGGCCTCTTCCCAGGCCTACAAGCGTCGGTGGCGGCAACGAGAGTTGCC
GGCATCGTCAAGGTCCAGGCCATGTTCAGCTCCAGCGCGAAGATCGTGAAGCCCAATGGC
GAGAAGCCGGACGAGTTCGAGTCGGGCATCTCCCAGGCCCTCCTGGAGCTGGAGATGAAC
TCGGACCTCAAGGCCCAGCTGCGCGAGCTGAACATCACGGCCGCCAAGGAAATCGAAGTG
GGCGGCGGTCGGAAGGCCATCATCATCTTTGTGCCGGTGCCGCAACTGAAGTCCTTCCAG
AAGATCCAAGTGCGGCTCGTGCGCGAGCTGGAGAAGAAGTTCAGCGGGAAGCACGTGGTC
TTCATCGCCCAGAGGAGAATTCTGCCCAAGCCAACTCGGAAAAGCCGTACAAAAAATAAG
CAGAAGCGTCCCAGAAGCCGCACGCTGACAGCCGTGCACGATGCCATCCTGGAGGACCTG
GTTTTCCCGAGTGAGATTGTGGGCAAGAGAATCCGCGTGAAGCTGGACGGCAGCCGCCTC
ATCAAGGTCCATTTGGACAAAGCACAGCAGAACAACGTGGAGCACAAGGTTGAAACATTT
TCTGGTGTCTATAAGAAGCTCACGGGCAAGGACGTTAATTTTGAATTCCCAGAGTTTCAG
TTATAAACAAATGACTAAATAAAATACTATTCACAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGACATCTAGGCCTCTTCCCAGGCCTACAAGCGTCGGTGGCGGCAACGAGAGTTGCC
GGCATCGTCAAGGTCCAGGCCATGTTCAGCTCCAGCGCGAAGATCGTGAAGCCCAATGGC
GAGAAGCCGGACGAGTTCGAGTCGGGCATCTCCCAGGCCCTCCTGGAGCTGGAGATGAAC
TCGGACCTCAAGGCCCAGCTGCGCGAGCTGAACATCACGGCCGCCAAGGAAATCGAAGTG
GGCGGCGGTCGGAAGGCCATCATCATCTTTGTGCCGGTGCCGCAACTGAAGTCCTTCCAG
AAGATCCAAGTGCGGCTCGTGCGCGAGCTGGAGAAGAAGTTCAGCGGGAAGCACGTGGTC
TTCATCGCCCAGAGGAGAATTCTGCCCAAGCCAACTCGGAAAAGCCGTACAAAAAATAAG
CAGAAGCGTCCCAGAAGCCGCACGCTGACAGCCGTGCACGATGCCATCCTGGAGGACCTG
GTTTTCCCGAGTGAGATTGTGGGCAAGAGAATCCGCGTGAAGCTGGACGGCAGCCGCCTC
ATCAAGGTCCATTTGGACAAAGCACAGCAGAACAACGTGGAGCACAAGGTTGAAACATTT
TCTGGTGTCTATAAGAAGCTCACGGGCAAGGACGTTAATTTTGAATTCCCAGAGTTTCAG
TTATAAACAAATGACTAAATAAAATACTATTCACAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|38051892|gb|AAH60557.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|38051892|gb|AAH60557.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               55-254, - strand, RNAz p=0.999753

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-254, - strand, RNAz p=0.999753

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               16-712, gnl|bosTau2|chr24 (27268088-27268786)
               

               
               16-712, gnl|Hg17|chr6 (97203704-97203040)
               

               
               16-712, gnl|Mm7|chrX (147668814-147668166)
               


               
               55-709, gnl|bosTau2|chr23 (2996112-2995480)
               

               
               55-709, gnl|Hg17|chr17 (23818962-23819599)
               

               
               55-709, gnl|Mm7|chrX (147668801-147668168)
               


               
               85-707, gnl|bosTau2|chr11 (48700584-48701203)
               

               
               85-707, gnl|Hg17|chr17 (23818970-23819597)
               

               
               85-707, gnl|Mm7|chrX (147668793-147668187)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-712, gnl|bosTau2|chr24 (27268088-27268786)
               

               
               16-712, gnl|Hg17|chr6 (97203704-97203040)
               

               
               16-712, gnl|Mm7|chrX (147668814-147668166)
               


               
               55-709, gnl|bosTau2|chr23 (2996112-2995480)
               

               
               55-709, gnl|Hg17|chr17 (23818962-23819599)
               

               
               55-709, gnl|Mm7|chrX (147668801-147668168)
               


               
               85-707, gnl|bosTau2|chr11 (48700584-48701203)
               

               
               85-707, gnl|Hg17|chr17 (23818970-23819597)
               

               
               85-707, gnl|Mm7|chrX (147668793-147668187)

Expressed library(ies): 83 entry(ies)

More info

Expressed library(ies): 83 entry(ies)

Help | Less info


               
               elu (7.32177)
               

               
               fty (6.15439)
               

               
               eje (5.23819)
               

               
               mcp (4.77816)
               

               
               duo (4.49283)
               

               
               med (4.30133)
               

               
               cje (4.2961)
               

               
               che (3.68048)
               

               
               lnt (3.55771)
               

               
               eep (3.55436)
               

               
               cst (3.50091)
               

               
               hlv (3.48141)
               

               
               nco (3.39641)
               

               
               mas (3.36488)
               

               
               cut (3.22855)
               

               
               jca (3.07692)
               

               
               nlu (3.0669)
               

               
               csp (3.06254)
               

               
               ese (3.03605)
               

               
               nmm (2.92165)
               

               
               ecc (2.76084)
               

               
               sme (2.74893)
               

               
               cag (2.57031)
               

               
               pty (2.56886)
               

               
               cly (2.53348)
               

               
               nca (2.46373)
               

               
               eru (2.40096)
               

               
               nep (2.39102)
               

               
               pgl (2.36967)
               

               
               ebs (2.36602)
               

               
               ill (2.2827)
               

               
               bla (2.23825)
               

               
               eye (2.21654)
               

               
               clu (2.15363)
               

               
               ton (2.106)
               

               
               cki (1.98282)
               

               
               ova (1.93698)
               

               
               fce (1.90114)
               

               
               ssp (1.89728)
               

               
               ece (1.83444)
               

               
               csk (1.8297)
               

               
               hyp (1.71404)
               

               
               nms (1.71086)
               

               
               eli (1.66996)
               

               
               nje (1.6592)
               

               
               fli (1.62305)
               

               
               sin (1.57453)
               

               
               pro (1.5361)
               

               
               sag (1.46172)
               

               
               hea (1.43149)
               

               
               aor (1.36692)
               

               
               col (1.36505)
               

               
               ldo (1.26103)
               

               
               amn (1.25313)
               

               
               ute (1.19506)
               

               
               nbm (1.1919)
               

               
               cga (1.11638)
               

               
               jej (1.08814)
               

               
               ste (1.08167)
               

               
               sto (1.07894)
               

               
               fbs (1.05208)
               

               
               fcc (0.988924)
               

               
               rec (0.865351)
               

               
               tes (0.831255)
               

               
               cov (0.792917)
               

               
               lun (0.752445)
               

               
               cbe (0.717703)
               

               
               cli (0.611247)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               cmu (0.55918)
               

               
               gul (0.532765)
               

               
               kid (0.518941)
               

               
               ski (0.440205)
               

               
               thg (0.380373)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 83 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (7.32177)
               

               
               fty (6.15439)
               

               
               eje (5.23819)
               

               
               mcp (4.77816)
               

               
               duo (4.49283)
               

               
               med (4.30133)
               

               
               cje (4.2961)
               

               
               che (3.68048)
               

               
               lnt (3.55771)
               

               
               eep (3.55436)
               

               
               cst (3.50091)
               

               
               hlv (3.48141)
               

               
               nco (3.39641)
               

               
               mas (3.36488)
               

               
               cut (3.22855)
               

               
               jca (3.07692)
               

               
               nlu (3.0669)
               

               
               csp (3.06254)
               

               
               ese (3.03605)
               

               
               nmm (2.92165)
               

               
               ecc (2.76084)
               

               
               sme (2.74893)
               

               
               cag (2.57031)
               

               
               pty (2.56886)
               

               
               cly (2.53348)
               

               
               nca (2.46373)
               

               
               eru (2.40096)
               

               
               nep (2.39102)
               

               
               pgl (2.36967)
               

               
               ebs (2.36602)
               

               
               ill (2.2827)
               

               
               bla (2.23825)
               

               
               eye (2.21654)
               

               
               clu (2.15363)
               

               
               ton (2.106)
               

               
               cki (1.98282)
               

               
               ova (1.93698)
               

               
               fce (1.90114)
               

               
               ssp (1.89728)
               

               
               ece (1.83444)
               

               
               csk (1.8297)
               

               
               hyp (1.71404)
               

               
               nms (1.71086)
               

               
               eli (1.66996)
               

               
               nje (1.6592)
               

               
               fli (1.62305)
               

               
               sin (1.57453)
               

               
               pro (1.5361)
               

               
               sag (1.46172)
               

               
               hea (1.43149)
               

               
               aor (1.36692)
               

               
               col (1.36505)
               

               
               ldo (1.26103)
               

               
               amn (1.25313)
               

               
               ute (1.19506)
               

               
               nbm (1.1919)
               

               
               cga (1.11638)
               

               
               jej (1.08814)
               

               
               ste (1.08167)
               

               
               sto (1.07894)
               

               
               fbs (1.05208)
               

               
               fcc (0.988924)
               

               
               rec (0.865351)
               

               
               tes (0.831255)
               

               
               cov (0.792917)
               

               
               lun (0.752445)
               

               
               cbe (0.717703)
               

               
               cli (0.611247)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               cmu (0.55918)
               

               
               gul (0.532765)
               

               
               kid (0.518941)
               

               
               ski (0.440205)
               

               
               thg (0.380373)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	16-712, gnl\|bosTau2\|chr24 (27268088-27268786)
	16-712, gnl\|Hg17\|chr6 (97203704-97203040)
	16-712, gnl\|Mm7\|chrX (147668814-147668166)

	55-709, gnl\|bosTau2\|chr23 (2996112-2995480)
	55-709, gnl\|Hg17\|chr17 (23818962-23819599)
	55-709, gnl\|Mm7\|chrX (147668801-147668168)

	85-707, gnl\|bosTau2\|chr11 (48700584-48701203)
	85-707, gnl\|Hg17\|chr17 (23818970-23819597)
	85-707, gnl\|Mm7\|chrX (147668793-147668187)

	elu (7.32177)
	fty (6.15439)
	eje (5.23819)
	mcp (4.77816)
	duo (4.49283)
	med (4.30133)
	cje (4.2961)
	che (3.68048)
	lnt (3.55771)
	eep (3.55436)
	cst (3.50091)
	hlv (3.48141)
	nco (3.39641)
	mas (3.36488)
	cut (3.22855)
	jca (3.07692)
	nlu (3.0669)
	csp (3.06254)
	ese (3.03605)
	nmm (2.92165)
	ecc (2.76084)
	sme (2.74893)
	cag (2.57031)
	pty (2.56886)
	cly (2.53348)
	nca (2.46373)
	eru (2.40096)
	nep (2.39102)
	pgl (2.36967)
	ebs (2.36602)
	ill (2.2827)
	bla (2.23825)
	eye (2.21654)
	clu (2.15363)
	ton (2.106)
	cki (1.98282)
	ova (1.93698)
	fce (1.90114)
	ssp (1.89728)
	ece (1.83444)
	csk (1.8297)
	hyp (1.71404)
	nms (1.71086)
	eli (1.66996)
	nje (1.6592)
	fli (1.62305)
	sin (1.57453)
	pro (1.5361)
	sag (1.46172)
	hea (1.43149)
	aor (1.36692)
	col (1.36505)
	ldo (1.26103)
	amn (1.25313)
	ute (1.19506)
	nbm (1.1919)
	cga (1.11638)
	jej (1.08814)
	ste (1.08167)
	sto (1.07894)
	fbs (1.05208)
	fcc (0.988924)
	rec (0.865351)
	tes (0.831255)
	cov (0.792917)
	lun (0.752445)
	cbe (0.717703)
	cli (0.611247)
	fat (0.58971)
	lin (0.582411)
	cmu (0.55918)
	gul (0.532765)
	kid (0.518941)
	ski (0.440205)
	thg (0.380373)
	fhi (0.339155)
	bfe (0.299715)
	sug (0.254582)
	tra (0.246184)
	fco (0.157208)
	isp (0.150376)
	cbl (0.114797)
	spc (0.113366)