Non-Coding RNA Search

Ss1.1-reje09b_a18.5.5

Sequence:


               
               CGACTCGCAGGAGGGAAGATGGAAGACTACCAGGCTACCGAGGAGACGGCTTTCGTCGTT
GACGAAGTGAGCAACATTGTGAAGGAGGCCATAGAAAGTGCAATCGGTGGCAACGCCTAT
CAGCACAGCAAAGTGAACCAGTGGACCACGAACGTCGTGGAACAGACTTTAAGCCAACTC
ACCAAGCTGGGGAAACCATTTAAGTACATCGTGACCTGTGTGATCATGCAGAAGAACGGA
GCCGGACTCCACACAGCAAGTTCCTGCTTCTGGGACAGCTCCACGGACGGGAGCTGCACG
GTGCGATGGGAGAACAAGACCATGTACTGCATCGTCAGCGCCTTCGGACTCTCCATCTGA
CCGCCGCGCCCAGCCCGCGCCTCGCCTGCGTCCCAGCACTGCTCTTCCTCTTCTCACCAC
CAGCCGTCTAGCCCGTGCCCACCCTTCTCCTCCTGAGTGTGTCAGTGTAGAGAAACCCAC
CAAATAACCGCACTGTTCTGTGACCCGCCCACCCCGGGTCAGAGGAGTCACGCGCCAAGG
TCGTCAGGCGCTGTACTGCCTCTTGTCTTAACTCTGAATGTTTCTTTTCAAAGGTGCTAA
AGGCCGAAATCTGCTCGTGTGAGATTTTCTCTACTCTCTGATTCAAATACACTAATTTTC
CGTACTTTTTACTTTTGTTAGAACAATAAATTATTCCAGTTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTCGCAGGAGGGAAGATGGAAGACTACCAGGCTACCGAGGAGACGGCTTTCGTCGTT
GACGAAGTGAGCAACATTGTGAAGGAGGCCATAGAAAGTGCAATCGGTGGCAACGCCTAT
CAGCACAGCAAAGTGAACCAGTGGACCACGAACGTCGTGGAACAGACTTTAAGCCAACTC
ACCAAGCTGGGGAAACCATTTAAGTACATCGTGACCTGTGTGATCATGCAGAAGAACGGA
GCCGGACTCCACACAGCAAGTTCCTGCTTCTGGGACAGCTCCACGGACGGGAGCTGCACG
GTGCGATGGGAGAACAAGACCATGTACTGCATCGTCAGCGCCTTCGGACTCTCCATCTGA
CCGCCGCGCCCAGCCCGCGCCTCGCCTGCGTCCCAGCACTGCTCTTCCTCTTCTCACCAC
CAGCCGTCTAGCCCGTGCCCACCCTTCTCCTCCTGAGTGTGTCAGTGTAGAGAAACCCAC
CAAATAACCGCACTGTTCTGTGACCCGCCCACCCCGGGTCAGAGGAGTCACGCGCCAAGG
TCGTCAGGCGCTGTACTGCCTCTTGTCTTAACTCTGAATGTTTCTTTTCAAAGGTGCTAA
AGGCCGAAATCTGCTCGTGTGAGATTTTCTCTACTCTCTGATTCAAATACACTAATTTTC
CGTACTTTTTACTTTTGTTAGAACAATAAATTATTCCAGTTTAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627652|ref|XP_518829.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627652|ref|XP_518829.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr9 (59352825-59353555)
               

               
               1-708, gnl|Hg17|chr17 (11959572-11960284)
               

               
               1-708, gnl|Mm7|chr6 (135364084-135363398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr9 (59352825-59353555)
               

               
               1-708, gnl|Hg17|chr17 (11959572-11960284)
               

               
               1-708, gnl|Mm7|chr6 (135364084-135363398)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               mcp (0.511945)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.511945)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	1-708, gnl\|bosTau2\|chr9 (59352825-59353555)
	1-708, gnl\|Hg17\|chr17 (11959572-11960284)
	1-708, gnl\|Mm7\|chr6 (135364084-135363398)

	mcp (0.511945)
	hlv (0.417769)
	elu (0.385356)
	nep (0.36785)
	ebs (0.354904)
	duo (0.345602)
	ecc (0.345105)
	eli (0.303628)
	eje (0.296501)
	fce (0.271592)
	pla (0.267344)
	cly (0.241284)
	med (0.232504)
	nms (0.213858)
	mas (0.210305)
	ton (0.1755)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	bla (0.124347)
	eep (0.122564)
	jej (0.0989218)