Non-Coding RNA Search

Ss1.1-reje09b_c4.5

Sequence:


               
               TAATTCCATGGGCGATGTCAGAGTAGCACTTTACAAATGGCTCAGTGGCATTCATCCCAG
AAGCCACCAGCTCTACTTGCACCAGCTATTCTTACTCTCTGTTCAGCAATTTTAATACTT
TTATTTTCGACTGCTTCCCAGTTTGGCAGGGCCTCTCTTAAGGATGAGCCCAGTTAGCAA
GAATGTGACTGTAAGCAAGCAGAGAGCCCTGTAAGGGTTATCTGCTCTACGGCTACTGCC
CCCAGTAAAATCATGTGAGACAAAAACGAAAACTGGTAATTAGTTCTGAACCTGTGCCTC
CCCAAACAAAACTCAAGCCACTCTTCTGCCCTCTTCCCCTCTGCATTAACCCTTTGCTGA
TCCTCAGGGACCACTCCCCCAACACCCCCATACCTGGGTGAGGGATGTTGGACAGAGCCC
ATTTCCATGTGCTGCAGCTGGGAGTGCACTAACATGTTTGCTCTTGGTTGATGGACAAGT
TAGAGGCCAGGGAGTGAAAATAGTCAACAGTGAGAAGGGAGAAGAGCTAGGTATCTGATT
CATAGTCCCTTCCCTTTGTGTGAAGGTTAGGTAGCAGCCTCTCCCCACTTTAGGGTTCTC
ACTTTGGACACCTTCTCTCTTCTAAGAGCCCAGATGTCTTACAGGTGAGCTCTGACGTGG
AGGTGTGGGAAAGGAGTGGGATTTTGTGTGTTTGCATGAGTGTGTGTAGCTTCAGGCCTT
GGCAGTTGGTAAGAGGGAGGGGAAGGAAGGAGAGCACAATCTTTGGAAGGTGTTTCTTGT
ACCTGCGGATCCTGCTCTGAATCTCCTTAATCCTCCACTGTGAATTGGGATGGGGATGAG
GGTGGGAGGGGTGCTGGGGAATAAATCTTGTATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTCCATGGGCGATGTCAGAGTAGCACTTTACAAATGGCTCAGTGGCATTCATCCCAG
AAGCCACCAGCTCTACTTGCACCAGCTATTCTTACTCTCTGTTCAGCAATTTTAATACTT
TTATTTTCGACTGCTTCCCAGTTTGGCAGGGCCTCTCTTAAGGATGAGCCCAGTTAGCAA
GAATGTGACTGTAAGCAAGCAGAGAGCCCTGTAAGGGTTATCTGCTCTACGGCTACTGCC
CCCAGTAAAATCATGTGAGACAAAAACGAAAACTGGTAATTAGTTCTGAACCTGTGCCTC
CCCAAACAAAACTCAAGCCACTCTTCTGCCCTCTTCCCCTCTGCATTAACCCTTTGCTGA
TCCTCAGGGACCACTCCCCCAACACCCCCATACCTGGGTGAGGGATGTTGGACAGAGCCC
ATTTCCATGTGCTGCAGCTGGGAGTGCACTAACATGTTTGCTCTTGGTTGATGGACAAGT
TAGAGGCCAGGGAGTGAAAATAGTCAACAGTGAGAAGGGAGAAGAGCTAGGTATCTGATT
CATAGTCCCTTCCCTTTGTGTGAAGGTTAGGTAGCAGCCTCTCCCCACTTTAGGGTTCTC
ACTTTGGACACCTTCTCTCTTCTAAGAGCCCAGATGTCTTACAGGTGAGCTCTGACGTGG
AGGTGTGGGAAAGGAGTGGGATTTTGTGTGTTTGCATGAGTGTGTGTAGCTTCAGGCCTT
GGCAGTTGGTAAGAGGGAGGGGAAGGAAGGAGAGCACAATCTTTGGAAGGTGTTTCTTGT
ACCTGCGGATCCTGCTCTGAATCTCCTTAATCCTCCACTGTGAATTGGGATGGGGATGAG
GGTGGGAGGGGTGCTGGGGAATAAATCTTGTATGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               305-455, - strand, RNAz p=0.825249
               

               
               608-831, + strand, RNAz p=0.99146

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-455, - strand, RNAz p=0.825249
               

               
               608-831, + strand, RNAz p=0.99146

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-876, gnl|bosTau2|chr19 (38802991-38803861)
               

               
               11-876, gnl|Hg17|chr17 (37985914-37985064)
               

               
               11-876, gnl|Mm7|chr11 (101206393-101205569)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-876, gnl|bosTau2|chr19 (38802991-38803861)
               

               
               11-876, gnl|Hg17|chr17 (37985914-37985064)
               

               
               11-876, gnl|Mm7|chr11 (101206393-101205569)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cut (0.339847)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               ssp (0.271039)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               ssp (0.271039)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	305-455, - strand, RNAz p=0.825249
	608-831, + strand, RNAz p=0.99146

	11-876, gnl\|bosTau2\|chr19 (38802991-38803861)
	11-876, gnl\|Hg17\|chr17 (37985914-37985064)
	11-876, gnl\|Mm7\|chr11 (101206393-101205569)

	cut (0.339847)
	sme (0.305437)
	jej (0.296765)
	ssp (0.271039)
	fcc (0.197785)
	sto (0.179824)
	fty (0.17584)
	cje (0.165235)
	cag (0.151194)
	lnt (0.142308)
	cly (0.120642)
	nbm (0.0993246)
	eje (0.0988338)