Non-Coding RNA Search

Ss1.1-reje09b_e4.5

Sequence:


               
               CACCGCCTCCACCTTCCGCCTGGTGCCGGCTGTCTGCGCGACCGTCGCCGCTTTCCATCG
TCGCGCGGTCCTTGCGGCGCCCGAGCCCGCAATGTCGGGCCCCAACGGGGACCTGGGCAT
GCCGGTGGAGGCGGGCGCGGAAGGCGAGAATGACGGCTTCGGGGAAGCAGAATATGCTGC
CATCAACTCCATGTTGGACCAGATCAACTCCTGTCTGGACCACCTGGAGGAGAAGAATGA
CCACCTCCACGCCCGCCTCCAGGAGCTGCTTGAATCCAACCGGCAGACGCGCCTTGAATT
CCAGCAGCAGCTCGGGGAGGCCCCCAGCGATGCCAGCCCCTAGGCTCTGGGAGCTCCCAG
CCAGGCCCCAACCCTGCCTCCCTGAGCCAGGCTCTGGCTGAGCACTCACTGCCTGGCTTA
GGTACCTTCTCGAAGGCCGGCCTACAGATCTCCCGCTGGGTCTGCCTGCCTAGGCCGCCC
TTCTGGTCCTTCCCTTGGCGTGCCTGGGCCGGCCTCCCCACCTGCCGGCCTCCCCCTCCT
GGGGCCAGGGGTGGGCCTGCACCCATCCACCTTGCCTGCCTGCCCAACTCCTGGACATTT
CCCACTCTGCCCAGGCCTTGAGTGTCCACATTAAATGGGTCTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGCCTCCACCTTCCGCCTGGTGCCGGCTGTCTGCGCGACCGTCGCCGCTTTCCATCG
TCGCGCGGTCCTTGCGGCGCCCGAGCCCGCAATGTCGGGCCCCAACGGGGACCTGGGCAT
GCCGGTGGAGGCGGGCGCGGAAGGCGAGAATGACGGCTTCGGGGAAGCAGAATATGCTGC
CATCAACTCCATGTTGGACCAGATCAACTCCTGTCTGGACCACCTGGAGGAGAAGAATGA
CCACCTCCACGCCCGCCTCCAGGAGCTGCTTGAATCCAACCGGCAGACGCGCCTTGAATT
CCAGCAGCAGCTCGGGGAGGCCCCCAGCGATGCCAGCCCCTAGGCTCTGGGAGCTCCCAG
CCAGGCCCCAACCCTGCCTCCCTGAGCCAGGCTCTGGCTGAGCACTCACTGCCTGGCTTA
GGTACCTTCTCGAAGGCCGGCCTACAGATCTCCCGCTGGGTCTGCCTGCCTAGGCCGCCC
TTCTGGTCCTTCCCTTGGCGTGCCTGGGCCGGCCTCCCCACCTGCCGGCCTCCCCCTCCT
GGGGCCAGGGGTGGGCCTGCACCCATCCACCTTGCCTGCCTGCCCAACTCCTGGACATTT
CCCACTCTGCCCAGGCCTTGAGTGTCCACATTAAATGGGTCTCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13129128|ref|NP_077017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13129128|ref|NP_077017.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               168-651, - strand, RNAz p=0.999797
               

               
               500-632, - strand, RNAz p=0.998736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-651, - strand, RNAz p=0.999797
               

               
               500-632, - strand, RNAz p=0.998736

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               168-651, gnl|bosTau2|chr11 (77648991-77649473)
               

               
               168-651, gnl|Hg17|chr9 (128005273-128005760)
               

               
               168-651, gnl|Mm7|chr2 (32386847-32386416)
               


               
               316-632, gnl|bosTau2|chr10 (45687062-45687382)
               

               
               316-632, gnl|Hg17|chr9 (128005421-128005741)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-651, gnl|bosTau2|chr11 (77648991-77649473)
               

               
               168-651, gnl|Hg17|chr9 (128005273-128005760)
               

               
               168-651, gnl|Mm7|chr2 (32386847-32386416)
               


               
               316-632, gnl|bosTau2|chr10 (45687062-45687382)
               

               
               316-632, gnl|Hg17|chr9 (128005421-128005741)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ebs (0.709807)
               

               
               cag (0.604778)
               

               
               ese (0.506009)
               

               
               hyp (0.42851)
               

               
               eje (0.395335)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.709807)
               

               
               cag (0.604778)
               

               
               ese (0.506009)
               

               
               hyp (0.42851)
               

               
               eje (0.395335)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	168-651, - strand, RNAz p=0.999797
	500-632, - strand, RNAz p=0.998736

	168-651, gnl\|bosTau2\|chr11 (77648991-77649473)
	168-651, gnl\|Hg17\|chr9 (128005273-128005760)
	168-651, gnl\|Mm7\|chr2 (32386847-32386416)

	316-632, gnl\|bosTau2\|chr10 (45687062-45687382)
	316-632, gnl\|Hg17\|chr9 (128005421-128005741)

	ebs (0.709807)
	cag (0.604778)
	ese (0.506009)
	hyp (0.42851)
	eje (0.395335)
	nlu (0.383362)
	nep (0.36785)
	med (0.232504)
	jej (0.197844)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	nje (0.16592)
	pty (0.142714)
	cov (0.132153)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)