Non-Coding RNA Search

Ss1.1-reje10b_c16.5

Sequence:


               
               ATTTTGCATTGTCCATATAGCTCTGATTCTCTTTTGTAAGTAAAACCACATCTAGATTTC
ATTTTCCAAGTGTTGGAGGTATTGACAGCTTAACAGACAAAACATACAAAAAAAATAAAA
ATAAAAGTCACAAAAACAAATTGAAAGGCAAAGCACATGATTGACCAAGGAAGAGATGCC
CTTAATGAAAATGGAACGAGATGCATGCAAAACAAAAAAGAAAACTGTCTAGAGGATTAA
CTAATTGGAGGAGTATAATTAATGTCCATGTAACACTGAAGCTATGCATTCGAAGAGCTT
TGAACTGCGCCCTTGTTGCCAGTGCTTTCCATTGTGCGGCAGCTTGCTAAGCCAAGTCAG
CCTCACACTTATGGATCAGTTGGTCGAAAAGATCTCCTCAGCTAGATCTTTTCATTGAAA
AATCTAAGAGGGTCTCTTTTGTATCATTTTGTTAAGAGCCGGCTATTGTTAATCCCAATT
CATGTTACAGTGTATTGATACCTTCTCCAACTCTCCCTACCCTACTACTTCTGGTTGATT
CTGTTGACTATTAATCCAGATGTAAACAACCAGATGGGTTTTTTGTTTTTGTTTTTGTTT
TTCCTAACTTGTACAAACTGATGTGTGTCACCTATGATGGGAGGGGAAAAATGTACAGAT
TAAAATTATTCAGTGTTATGTACTGTAAGCTAATATTTTTGTAGAATGGACATTGATCTC
CTTTGCAAAACTTGGAGGCTATTTCAACATTGCATTGTAGAAATGTGAAGTAATTTATGC
AATGGAAAGCAAGCCCGTGATAGATGAACACTTCCTCCCAGAGTGTTCTGATCCTGTCCG
TGGTATTTGAGGATGTCTTCATATTGCTCTTGTATTCTTTCTAATGGGGTTTAATGACTA
GTTTACTTGAAGGAAAATGTGATAACGCCATTTGGTTCATGTGTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGCATTGTCCATATAGCTCTGATTCTCTTTTGTAAGTAAAACCACATCTAGATTTC
ATTTTCCAAGTGTTGGAGGTATTGACAGCTTAACAGACAAAACATACAAAAAAAATAAAA
ATAAAAGTCACAAAAACAAATTGAAAGGCAAAGCACATGATTGACCAAGGAAGAGATGCC
CTTAATGAAAATGGAACGAGATGCATGCAAAACAAAAAAGAAAACTGTCTAGAGGATTAA
CTAATTGGAGGAGTATAATTAATGTCCATGTAACACTGAAGCTATGCATTCGAAGAGCTT
TGAACTGCGCCCTTGTTGCCAGTGCTTTCCATTGTGCGGCAGCTTGCTAAGCCAAGTCAG
CCTCACACTTATGGATCAGTTGGTCGAAAAGATCTCCTCAGCTAGATCTTTTCATTGAAA
AATCTAAGAGGGTCTCTTTTGTATCATTTTGTTAAGAGCCGGCTATTGTTAATCCCAATT
CATGTTACAGTGTATTGATACCTTCTCCAACTCTCCCTACCCTACTACTTCTGGTTGATT
CTGTTGACTATTAATCCAGATGTAAACAACCAGATGGGTTTTTTGTTTTTGTTTTTGTTT
TTCCTAACTTGTACAAACTGATGTGTGTCACCTATGATGGGAGGGGAAAAATGTACAGAT
TAAAATTATTCAGTGTTATGTACTGTAAGCTAATATTTTTGTAGAATGGACATTGATCTC
CTTTGCAAAACTTGGAGGCTATTTCAACATTGCATTGTAGAAATGTGAAGTAATTTATGC
AATGGAAAGCAAGCCCGTGATAGATGAACACTTCCTCCCAGAGTGTTCTGATCCTGTCCG
TGGTATTTGAGGATGTCTTCATATTGCTCTTGTATTCTTTCTAATGGGGTTTAATGACTA
GTTTACTTGAAGGAAAATGTGATAACGCCATTTGGTTCATGTGTGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-939, gnl|bosTau2|chr24 (35042808-35043733)
               

               
               1-939, gnl|Hg17|chr18 (51041655-51040758)
               

               
               1-939, gnl|Mm7|chr18 (70080149-70081060)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-939, gnl|bosTau2|chr24 (35042808-35043733)
               

               
               1-939, gnl|Hg17|chr18 (51041655-51040758)
               

               
               1-939, gnl|Mm7|chr18 (70080149-70081060)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-939, gnl\|bosTau2\|chr24 (35042808-35043733)
	1-939, gnl\|Hg17\|chr18 (51041655-51040758)
	1-939, gnl\|Mm7\|chr18 (70080149-70081060)

	fco (0.157208)
	liv (0.146284)
	pty (0.142714)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)