Non-Coding RNA Search

Ss1.1-reje10b_h20.5.5

Sequence:


               
               CTTCTGGACGAGCTCAGGGATACGGAGCTGCGGCAGCGCCGGCAGCTGTTCGAGGCTGGC
CTCCACTCCTCCGCCCGCTACGGCAGCCACGACGGCGGCAGCGCCGCGCCCGACGGCAAG
AAGAAGCCTCGGAAGTGGCTGCAGCTGGAGACCTCGGAGCGACGGTGTCAGGTGTGCCAG
CACCTGTGCTTCCTGTCCATGGTCGTGCAGGAGAACGAGAACGTGGTCTTCTGCCTGGAG
TGCGCCCTGCGCCACGTGGAGAAGCAGAAGTCCTGCCGGGGCCTGAAGCTGATGTACCGT
TACGACGAGGAACAAATCATCAGCCTGGTCAATCAGATCTGTGGCAAAGTATCTGGTAAA
AACGGCAGCATTGAGAACTGTCTCGGTAAACCCACACCAAAAAGAGGGCCCCGCAAGAGA
GCCACGGTGGACGTGCCGCCCTCCCGGCTCGCACCCTCCTCTTCGTGAAGATGCCAGCAC
CGCGGGCGAGGGATGGATATTTTTTTGTAATTATTATATTCTAGTTTGGAGTACTTGCTG
TAGGATACAAGCTGTCTTTGCACTAGCTCTAAAGAAGATTTTCTTCTGGTTTTAGAGAAC
TAATTTTGTTTTAGCATTAAACTGTTGAACTTTTTTTTGTACTTAGAATACCTAGATACT
GCAGTCAGATTTTTGAAACTGCCGTATATTCACTGTTTTAAAACCCTTGAGGGGCTGTAT
TATTTTGTATTGCCCCTTGTGGCTGACAAAAGCCTGTTTGATTTTTTTTGTTTGTTTTTG
TTTTCGTTTTTGTTTTTTTGTAATTGTTGGGGAAAAAAGGCTTTTTAACCCGTTTTTGAA
GAGGGTGAAGTTTGGAGAACAAATTTTAAAATCAGTCATGTGAGCAGATTTTTTTCTAGA
GAGGAAAAGGGATAGGAGACACACACACACACACACACACACACACACAAAACTTGAAAA
GAAATGGCTTTACTCGGGCTGTCTTTTCTTCTGTCATGTGCAAGATGAGTTTGTAATTGT
TGAAACCGGAGACTCCCCGTTGTGTTTCTTTGGGCGGTGATGGCAGCTGAAGGCGGACGT
TGTTTCCCAACAGGCGGGAGGAGGAGGTCGCGGGACGCGGTTCTCTTTACCAGCACATCA
CTATGCATCTGCTTAAGGGAGAAGAGGAGAGAGAAGAAAAGGACTGCCTGCCTTGAGGGG
TCACGTGAGGGAAACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTGGTG
CTGTTGGCTACTTTATCAAAAAACCCTTCAATAGCATCCTTAAGGAAAAAAACAAAAAAA
CAAAAAAAAGGAAAAAAGTGATGGAAGCCCGAAGTGCTTCTCTGTCATGGATGTGCAATC
TTTCTAACATTCCGTCTTCATCTCACTGCTTGTTGTTTTACACCTTCACAGGTCAGCATT
AACCTTTCTTTTTAAACTCGTTTCGTTGGTGATCACAGCTAGAGCCACGAGGAGGTCTGC
GGTTCGTTTTGAATGTGAAAATGCATCTGCGCTCATCTGGTCTATTTTTTCTCTTCATGT
TGTAACAAAAAGAAAAAAAAAAGGAAAAAAAAAAAGAACCCCATCCCTTTTGTACATACG
CCTGTAAATTGTTTTAAATACTTGAGCCTTTTTCTGGGTGGGGGAGGGGAGGGGTGCGAA
GACGAGATGAAGAAAAGCCTTACACTTCAGTTTCTTCATCGGTTGGATTGGATGCTTACA
GGGTTTTTCTTGTAACATTTATAAGTGCTGCTTACATCACTGAACAACAACAAAAAAATA
ATAATGGAGTAGCTGTTGCCCTTCTCCGGTTGTGTGTACAGTATGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGGACGAGCTCAGGGATACGGAGCTGCGGCAGCGCCGGCAGCTGTTCGAGGCTGGC
CTCCACTCCTCCGCCCGCTACGGCAGCCACGACGGCGGCAGCGCCGCGCCCGACGGCAAG
AAGAAGCCTCGGAAGTGGCTGCAGCTGGAGACCTCGGAGCGACGGTGTCAGGTGTGCCAG
CACCTGTGCTTCCTGTCCATGGTCGTGCAGGAGAACGAGAACGTGGTCTTCTGCCTGGAG
TGCGCCCTGCGCCACGTGGAGAAGCAGAAGTCCTGCCGGGGCCTGAAGCTGATGTACCGT
TACGACGAGGAACAAATCATCAGCCTGGTCAATCAGATCTGTGGCAAAGTATCTGGTAAA
AACGGCAGCATTGAGAACTGTCTCGGTAAACCCACACCAAAAAGAGGGCCCCGCAAGAGA
GCCACGGTGGACGTGCCGCCCTCCCGGCTCGCACCCTCCTCTTCGTGAAGATGCCAGCAC
CGCGGGCGAGGGATGGATATTTTTTTGTAATTATTATATTCTAGTTTGGAGTACTTGCTG
TAGGATACAAGCTGTCTTTGCACTAGCTCTAAAGAAGATTTTCTTCTGGTTTTAGAGAAC
TAATTTTGTTTTAGCATTAAACTGTTGAACTTTTTTTTGTACTTAGAATACCTAGATACT
GCAGTCAGATTTTTGAAACTGCCGTATATTCACTGTTTTAAAACCCTTGAGGGGCTGTAT
TATTTTGTATTGCCCCTTGTGGCTGACAAAAGCCTGTTTGATTTTTTTTGTTTGTTTTTG
TTTTCGTTTTTGTTTTTTTGTAATTGTTGGGGAAAAAAGGCTTTTTAACCCGTTTTTGAA
GAGGGTGAAGTTTGGAGAACAAATTTTAAAATCAGTCATGTGAGCAGATTTTTTTCTAGA
GAGGAAAAGGGATAGGAGACACACACACACACACACACACACACACACAAAACTTGAAAA
GAAATGGCTTTACTCGGGCTGTCTTTTCTTCTGTCATGTGCAAGATGAGTTTGTAATTGT
TGAAACCGGAGACTCCCCGTTGTGTTTCTTTGGGCGGTGATGGCAGCTGAAGGCGGACGT
TGTTTCCCAACAGGCGGGAGGAGGAGGTCGCGGGACGCGGTTCTCTTTACCAGCACATCA
CTATGCATCTGCTTAAGGGAGAAGAGGAGAGAGAAGAAAAGGACTGCCTGCCTTGAGGGG
TCACGTGAGGGAAACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTGGTG
CTGTTGGCTACTTTATCAAAAAACCCTTCAATAGCATCCTTAAGGAAAAAAACAAAAAAA
CAAAAAAAAGGAAAAAAGTGATGGAAGCCCGAAGTGCTTCTCTGTCATGGATGTGCAATC
TTTCTAACATTCCGTCTTCATCTCACTGCTTGTTGTTTTACACCTTCACAGGTCAGCATT
AACCTTTCTTTTTAAACTCGTTTCGTTGGTGATCACAGCTAGAGCCACGAGGAGGTCTGC
GGTTCGTTTTGAATGTGAAAATGCATCTGCGCTCATCTGGTCTATTTTTTCTCTTCATGT
TGTAACAAAAAGAAAAAAAAAAGGAAAAAAAAAAAGAACCCCATCCCTTTTGTACATACG
CCTGTAAATTGTTTTAAATACTTGAGCCTTTTTCTGGGTGGGGGAGGGGAGGGGTGCGAA
GACGAGATGAAGAAAAGCCTTACACTTCAGTTTCTTCATCGGTTGGATTGGATGCTTACA
GGGTTTTTCTTGTAACATTTATAAGTGCTGCTTACATCACTGAACAACAACAAAAAAATA
ATAATGGAGTAGCTGTTGCCCTTCTCCGGTTGTGTGTACAGTATGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55991537|gb|AAH86634.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55991537|gb|AAH86634.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               86-203, + strand, RNAz p=0.780682
               

               
               482-754, + strand, RNAz p=0.933618
               

               
               1680-1798, - strand, RNAz p=0.842576

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-203, + strand, RNAz p=0.780682
               

               
               482-754, + strand, RNAz p=0.933618
               

               
               1680-1798, - strand, RNAz p=0.842576

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004973, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004973, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-203, gnl|bosTau2|chr23 (36767087-36766899)
               

               
               15-203, gnl|Hg17|chr6 (15621446-15621634)
               

               
               15-203, gnl|Mm7|chr13 (44364356-44364544)
               


               
               308-1848, gnl|bosTau2|chr23 (36762159-36760629)
               

               
               308-1848, gnl|Hg17|chr6 (15628277-15629816)
               

               
               308-1848, gnl|Mm7|chr13 (44369393-44370834)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-203, gnl|bosTau2|chr23 (36767087-36766899)
               

               
               15-203, gnl|Hg17|chr6 (15621446-15621634)
               

               
               15-203, gnl|Mm7|chr13 (44364356-44364544)
               


               
               308-1848, gnl|bosTau2|chr23 (36762159-36760629)
               

               
               308-1848, gnl|Hg17|chr6 (15628277-15629816)
               

               
               308-1848, gnl|Mm7|chr13 (44369393-44370834)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	86-203, + strand, RNAz p=0.780682
	482-754, + strand, RNAz p=0.933618
	1680-1798, - strand, RNAz p=0.842576

	15-203, gnl\|bosTau2\|chr23 (36767087-36766899)
	15-203, gnl\|Hg17\|chr6 (15621446-15621634)
	15-203, gnl\|Mm7\|chr13 (44364356-44364544)

	308-1848, gnl\|bosTau2\|chr23 (36762159-36760629)
	308-1848, gnl\|Hg17\|chr6 (15628277-15629816)
	308-1848, gnl\|Mm7\|chr13 (44369393-44370834)

	fhi (0.339155)
	ece (0.229305)
	cmu (0.186393)
	cje (0.165235)
	csp (0.161186)
	hlv (0.139256)
	che (0.136314)
	thg (0.126791)
	tra (0.123092)
	med (0.116252)
	eje (0.0988338)