Ss1.1-reje10b_m15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGCGTTTCAGCTAGTAAGTGCAGGAAGGTTGACCCTAGACAAAGCCCTTGACCTGACTC ACTATCTCCAGCATGAAACAAGCATCCCTGCCCTTCTCCAGGGTTTGGATTACCTGGAAT CTTTTTACCACACCATGGACAGAAGGAATATTTCAGACATCACTGAAAATCTTAAGTGTT ACCTTCTCCAGTATTTTAAGCCAGTGATTGACATGCAAAGCTGGAGCGACGAGGGCTCGG TCTGGGACAGAAGGCTTCGCTCATCTCTCTTGAAGCTGGCCTGTTACCTGAACTATGCCC CTTGCATCCGGAAGGCAACGGAACTCTTCTCTCAATGGATGGAATCCAGTGGAAAATTAA ATATCCCAACTGATGTTTTAAAGATTGTGTATTCTGTGGGTGCTCAAACAACAGAAGGAT GGAATTACCTTTTGGAACAATATGGACTCTCATTGTCAGGTGCTGAAAAAAACAAAATTC TCTATGCATTGTCAACCAGCAAACATCAGGAGAAGTTGATAAAATTAATTGATCTAGGAA TGGAAGGAAAGGTTATCAAGACACAGGACTTGGCATCTCTTCTTTACGCGATTGCCAGAA ATCCAAAGGGGCAGCAATTAGCCTGGAATTTTGTAAAAGAAAATTGGACCCATCTCCTTG AAAGATTTGAGTTGAGCTCATTTCCCATGAGAATAATCATCTCTGGTACAACATCTCACT TCGGTAATTCTTTTGTTATTTTTCAGGTGAAACTGTTCTTTGAATCTCTTCAGACTCAAG GATCATATTTGGAAGTTTTTCAGATTGTTTTGGAAACCATTTCCAAAAATATTAAGTGGC TAGAGAAGAATCTTCCCTCCCTGAGAAACTGGCTACTGATTAGTATTTAAATGGTCAATA GAAACAACACATCAGATGCAAACGGTCTGCGTGAAGTGAGCAAAGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGCGTTTCAGCTAGTAAGTGCAGGAAGGTTGACCCTAGACAAAGCCCTTGACCTGACTC ACTATCTCCAGCATGAAACAAGCATCCCTGCCCTTCTCCAGGGTTTGGATTACCTGGAAT CTTTTTACCACACCATGGACAGAAGGAATATTTCAGACATCACTGAAAATCTTAAGTGTT ACCTTCTCCAGTATTTTAAGCCAGTGATTGACATGCAAAGCTGGAGCGACGAGGGCTCGG TCTGGGACAGAAGGCTTCGCTCATCTCTCTTGAAGCTGGCCTGTTACCTGAACTATGCCC CTTGCATCCGGAAGGCAACGGAACTCTTCTCTCAATGGATGGAATCCAGTGGAAAATTAA ATATCCCAACTGATGTTTTAAAGATTGTGTATTCTGTGGGTGCTCAAACAACAGAAGGAT GGAATTACCTTTTGGAACAATATGGACTCTCATTGTCAGGTGCTGAAAAAAACAAAATTC TCTATGCATTGTCAACCAGCAAACATCAGGAGAAGTTGATAAAATTAATTGATCTAGGAA TGGAAGGAAAGGTTATCAAGACACAGGACTTGGCATCTCTTCTTTACGCGATTGCCAGAA ATCCAAAGGGGCAGCAATTAGCCTGGAATTTTGTAAAAGAAAATTGGACCCATCTCCTTG AAAGATTTGAGTTGAGCTCATTTCCCATGAGAATAATCATCTCTGGTACAACATCTCACT TCGGTAATTCTTTTGTTATTTTTCAGGTGAAACTGTTCTTTGAATCTCTTCAGACTCAAG GATCATATTTGGAAGTTTTTCAGATTGTTTTGGAAACCATTTCCAAAAATATTAAGTGGC TAGAGAAGAATCTTCCCTCCCTGAGAAACTGGCTACTGATTAGTATTTAAATGGTCAATA GAAACAACACATCAGATGCAAACGGTCTGCGTGAAGTGAGCAAAGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 170-361, gnl|bosTau2|chr7 (59800835-59801026) | |
| 170-361, gnl|canFam2|chr3 (15670816-15670649) | |
| 170-361, gnl|danRer3|chrNA (233786380-233786205) | |
| 170-361, gnl|fr1|chrUn (197790373-197790209) | |
| 170-361, gnl|hg17|chr5 (96271013-96271180) | |
| 170-361, gnl|Hg17|chr5 (96271033-96271224) | |
| 170-361, gnl|loxAfr1|scaffold_1968 (62722-62555) | |
| 170-361, gnl|Mm7|chr13 (71686893-71687084) | |
| 170-361, gnl|monDom2|scaffold_93 (100832-100979) | |
| 170-361, gnl|oryCun1|scaffold_1351 (5844-5675) | |
| 170-361, gnl|panTro1|chr4 (102034857-102035024) | |
| 170-361, gnl|rheMac2|chr6 (93115786-93115953) | |
| 170-361, gnl|rn3|chr1 (56170206-56170054) | |
| 170-361, gnl|tetNig1|chr12 (3049114-3048963) | |
| 525-663, gnl|bosTau2|chr7 (59804848-59804986) | |
| 525-663, gnl|canFam2|chr3 (15667257-15667090) | |
| 525-663, gnl|danRer3|chrNA (233778680-233778522) | |
| 525-663, gnl|dasNov1|scaffold_164370 (2508-2353) | |
| 525-663, gnl|echTel1|scaffold_102138 (1077-1215) | |
| 525-663, gnl|fr1|chrUn (166654741-166654896) | |
| 525-663, gnl|hg17|chr5 (96274771-96274938) | |
| 525-663, gnl|Hg17|chr5 (96274778-96274916) | |
| 525-663, gnl|loxAfr1|scaffold_1968 (59057-58890) | |
| 525-663, gnl|mm7|chr17 (15702397-15702244) | |
| 525-663, gnl|Mm7|chr17_random (3512200-3512062) | |
| 525-663, gnl|oryCun1|scaffold_205569 (86387-86540) | |
| 525-663, gnl|panTro1|chr4 (102038717-102038884) | |
| 525-663, gnl|rheMac2|chr6 (93119287-93119454) | |
| 525-663, gnl|rn3|chr1 (56067899-56067743) | |
| 730-942, gnl|bosTau2|chr7 (59807875-59808085) | |
| 730-942, gnl|Hg17|chr5 (96278908-96279457) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-361, gnl|bosTau2|chr7 (59800835-59801026) | |
| 170-361, gnl|canFam2|chr3 (15670816-15670649) | |
| 170-361, gnl|danRer3|chrNA (233786380-233786205) | |
| 170-361, gnl|fr1|chrUn (197790373-197790209) | |
| 170-361, gnl|hg17|chr5 (96271013-96271180) | |
| 170-361, gnl|Hg17|chr5 (96271033-96271224) | |
| 170-361, gnl|loxAfr1|scaffold_1968 (62722-62555) | |
| 170-361, gnl|Mm7|chr13 (71686893-71687084) | |
| 170-361, gnl|monDom2|scaffold_93 (100832-100979) | |
| 170-361, gnl|oryCun1|scaffold_1351 (5844-5675) | |
| 170-361, gnl|panTro1|chr4 (102034857-102035024) | |
| 170-361, gnl|rheMac2|chr6 (93115786-93115953) | |
| 170-361, gnl|rn3|chr1 (56170206-56170054) | |
| 170-361, gnl|tetNig1|chr12 (3049114-3048963) | |
| 525-663, gnl|bosTau2|chr7 (59804848-59804986) | |
| 525-663, gnl|canFam2|chr3 (15667257-15667090) | |
| 525-663, gnl|danRer3|chrNA (233778680-233778522) | |
| 525-663, gnl|dasNov1|scaffold_164370 (2508-2353) | |
| 525-663, gnl|echTel1|scaffold_102138 (1077-1215) | |
| 525-663, gnl|fr1|chrUn (166654741-166654896) | |
| 525-663, gnl|hg17|chr5 (96274771-96274938) | |
| 525-663, gnl|Hg17|chr5 (96274778-96274916) | |
| 525-663, gnl|loxAfr1|scaffold_1968 (59057-58890) | |
| 525-663, gnl|mm7|chr17 (15702397-15702244) | |
| 525-663, gnl|Mm7|chr17_random (3512200-3512062) | |
| 525-663, gnl|oryCun1|scaffold_205569 (86387-86540) | |
| 525-663, gnl|panTro1|chr4 (102038717-102038884) | |
| 525-663, gnl|rheMac2|chr6 (93119287-93119454) | |
| 525-663, gnl|rn3|chr1 (56067899-56067743) | |
| 730-942, gnl|bosTau2|chr7 (59807875-59808085) | |
| 730-942, gnl|Hg17|chr5 (96278908-96279457) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cty (0.20816) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| cbl (0.114797) | |
| eje (0.0988338) |