Non-Coding RNA Search

Ss1.1-reje11b_c1.5

Sequence:


               
               TGCTCTCTGGTAGGTGACAGACAGTTTAGTCAGGGGGTGCTAAAGAGTTGAGCGGTACCC
CTCCCGGGTGGCATTTATGTCTTAATAGGGGCTACAGATAATGCCTTAATCCAAAGGAGT
GGCTCTAATAGTGGGAATTTCAGGCACAGTAGTGGGCCAGTAAGGGAGATTATTTTTGTA
TCAGAGGGGGGCTTTTCGGAAGCCCCCATCATACCTATCTCTAAAAATCAAACCTTCATT
AGTGCATAAGCACAAGCAAGCACACTTAAATTATATACATTTTCCACAGTTTTGAGACAC
CTCCCTTCTATTGGCCCTATCTTTAAAAATGGGGGAAAAAAAAGATTAATTTAAATCTCA
CTGGGAAATGTAGCCTATTTTTCACTGGCTTCCAGCCATCTGGCCCACCCGACCCTGTTC
CATTCCCTTTCTGCTCCTTCTCTTTTCAACTATCATCACATCAGTTCATTGACGTGTGTC
CTCTCTGTACCCTCCTTACCCACCTTCCTCCATGTACTTCCTCCCTTTCCTGTTCCCCCA
GCGGGAATTGTGCTGTTTTTCAGTGTCGTCAGGACAAAGAGCAGGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCTCTGGTAGGTGACAGACAGTTTAGTCAGGGGGTGCTAAAGAGTTGAGCGGTACCC
CTCCCGGGTGGCATTTATGTCTTAATAGGGGCTACAGATAATGCCTTAATCCAAAGGAGT
GGCTCTAATAGTGGGAATTTCAGGCACAGTAGTGGGCCAGTAAGGGAGATTATTTTTGTA
TCAGAGGGGGGCTTTTCGGAAGCCCCCATCATACCTATCTCTAAAAATCAAACCTTCATT
AGTGCATAAGCACAAGCAAGCACACTTAAATTATATACATTTTCCACAGTTTTGAGACAC
CTCCCTTCTATTGGCCCTATCTTTAAAAATGGGGGAAAAAAAAGATTAATTTAAATCTCA
CTGGGAAATGTAGCCTATTTTTCACTGGCTTCCAGCCATCTGGCCCACCCGACCCTGTTC
CATTCCCTTTCTGCTCCTTCTCTTTTCAACTATCATCACATCAGTTCATTGACGTGTGTC
CTCTCTGTACCCTCCTTACCCACCTTCCTCCATGTACTTCCTCCCTTTCCTGTTCCCCCA
GCGGGAATTGTGCTGTTTTTCAGTGTCGTCAGGACAAAGAGCAGGTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-276, - strand, RNAz p=0.727247
               

               
               331-440, - strand, RNAz p=0.817505

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-276, - strand, RNAz p=0.727247
               

               
               331-440, - strand, RNAz p=0.817505

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-587, gnl|bosTau2|chr3 (3514483-3515062)
               

               
               5-587, gnl|Hg17|chr1 (162759193-162758567)
               

               
               5-587, gnl|Mm7|chr1 (167065366-167065948)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-587, gnl|bosTau2|chr3 (3514483-3515062)
               

               
               5-587, gnl|Hg17|chr1 (162759193-162758567)
               

               
               5-587, gnl|Mm7|chr1 (167065366-167065948)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               eje (0.0988338)

	161-276, - strand, RNAz p=0.727247
	331-440, - strand, RNAz p=0.817505

	5-587, gnl\|bosTau2\|chr3 (3514483-3515062)
	5-587, gnl\|Hg17\|chr1 (162759193-162758567)
	5-587, gnl\|Mm7\|chr1 (167065366-167065948)