Non-Coding RNA Search

Ss1.1-reje11b_h2.5

Sequence:


               
               GCTTATCATTGAGGTTCTTTTTAGAACATCCGTAGGGTCGGCGAGGAT------------
------------------------------------------------------------
------------AACACCGGATCATTAACCCACTGTGTCACAGCAGGAACTACAATAATT
CTTAATTTGATTTTTACACAAGAGTTTTGTATTTGTATCCACTGTAAGTATTCAACTGCA
CTAATAGAAGACCCTACTATAATAGCTTAATCTGCTAACTTTTATGTATCTCATGCAATA
AGAAGTCCAGAGATGGGCAGTCCAGCCCTGATAAGGTGGCTCAGGGACCCTGACTCCTTT
CACCTCCATGTGGTCTGCCAGGCAGACCTTTGTGTTCATTTTTATTGTCTCGTGGTTAAG
GGAACTATAATATCTCTGGTCCTTTCGTCTACGTTCAGGAAAGAAAAAGGAGAGAGAGGC
AAAGGGGGCTTCTCTTAGCAAGTCTTTACCTTTTTATTTGGAAAGGACAGCCCTCCCTGG
CCAGAACCATGTGGCATGGCCATCCCTAACTGCAAGTATTTGAAAACAAGTACTTTTTTT
CTTTCTAGCCTCTACAGGAGAGAAAGGCAAGAGAGGAGGGAGATGTGAATGGCTTTTGAG
TAACCAGCCCGTGGTGTTTGCTGCAATATGTAGACACATCTGTCCATTTTAATTGTATTG
AGTCTGTGCTAGATTTATAGTAACAGTCAAAAGCAGTTACTAGTTTAGCTTTGTTACAGT
TCAGTGTATTTTTTAGTGTTTTATATATGAATAGAGAAATGCTAACATGGTGATGAAAGC
ACATTAGCAAAATTCTCTCTCTTCAGAGAAGATAGAATTCCAGTGGTTTAATGTCAGAAG
ATGATTTGCTTGAGTGACTTTAGATTTTTAAAATTAAGATTGAGGGAGTTTCATAACTTC
TGATTATATACAAACTGTGCTAGGTATGATTTCTCTCTCATACTTTATCATTCTTTATAG
TGCTTCCTAATGAAACATATTCAGAGAATCAACCAGGTATATGTATAGGAAGCACCCAGT
TTGCATTATTTCAGTTACTGAAAGTGGGCTTTTAATGGATTTTAAGAAAATATTAGTTAT
GAATTAAAAAGCCATCTTTTTATTTTATTTTTTTAATTGTATTCAATTGTTATTTTCCTA
ATACATTTTTTTCCTACTGTACAGCATAGTGACCCAGTTACACATACATGTATACATTCT
TTTTTCTTGAGTTGTCATGCTCCATCATAAGTGAAT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAGTCGTTTTAATGTTGAAAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTATCATTGAGGTTCTTTTTAGAACATCCGTAGGGTCGGCGAGGAT------------
------------------------------------------------------------
------------AACACCGGATCATTAACCCACTGTGTCACAGCAGGAACTACAATAATT
CTTAATTTGATTTTTACACAAGAGTTTTGTATTTGTATCCACTGTAAGTATTCAACTGCA
CTAATAGAAGACCCTACTATAATAGCTTAATCTGCTAACTTTTATGTATCTCATGCAATA
AGAAGTCCAGAGATGGGCAGTCCAGCCCTGATAAGGTGGCTCAGGGACCCTGACTCCTTT
CACCTCCATGTGGTCTGCCAGGCAGACCTTTGTGTTCATTTTTATTGTCTCGTGGTTAAG
GGAACTATAATATCTCTGGTCCTTTCGTCTACGTTCAGGAAAGAAAAAGGAGAGAGAGGC
AAAGGGGGCTTCTCTTAGCAAGTCTTTACCTTTTTATTTGGAAAGGACAGCCCTCCCTGG
CCAGAACCATGTGGCATGGCCATCCCTAACTGCAAGTATTTGAAAACAAGTACTTTTTTT
CTTTCTAGCCTCTACAGGAGAGAAAGGCAAGAGAGGAGGGAGATGTGAATGGCTTTTGAG
TAACCAGCCCGTGGTGTTTGCTGCAATATGTAGACACATCTGTCCATTTTAATTGTATTG
AGTCTGTGCTAGATTTATAGTAACAGTCAAAAGCAGTTACTAGTTTAGCTTTGTTACAGT
TCAGTGTATTTTTTAGTGTTTTATATATGAATAGAGAAATGCTAACATGGTGATGAAAGC
ACATTAGCAAAATTCTCTCTCTTCAGAGAAGATAGAATTCCAGTGGTTTAATGTCAGAAG
ATGATTTGCTTGAGTGACTTTAGATTTTTAAAATTAAGATTGAGGGAGTTTCATAACTTC
TGATTATATACAAACTGTGCTAGGTATGATTTCTCTCTCATACTTTATCATTCTTTATAG
TGCTTCCTAATGAAACATATTCAGAGAATCAACCAGGTATATGTATAGGAAGCACCCAGT
TTGCATTATTTCAGTTACTGAAAGTGGGCTTTTAATGGATTTTAAGAAAATATTAGTTAT
GAATTAAAAAGCCATCTTTTTATTTTATTTTTTTAATTGTATTCAATTGTTATTTTCCTA
ATACATTTTTTTCCTACTGTACAGCATAGTGACCCAGTTACACATACATGTATACATTCT
TTTTTCTTGAGTTGTCATGCTCCATCATAAGTGAAT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAGTCGTTTTAATGTTGAAAGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               294-652, - strand, RNAz p=0.999531

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-652, - strand, RNAz p=0.999531

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               97-774, gnl|bosTau2|chr15 (19253713-19254391)
               

               
               97-774, gnl|Mm7|chr7 (42865000-42864347)
               


               
               790-1078, gnl|bosTau2|chr15 (19254382-19254665)
               

               
               790-1078, gnl|Mm7|chr7 (42864356-42864099)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-774, gnl|bosTau2|chr15 (19253713-19254391)
               

               
               97-774, gnl|Mm7|chr7 (42865000-42864347)
               


               
               790-1078, gnl|bosTau2|chr15 (19254382-19254665)
               

               
               790-1078, gnl|Mm7|chr7 (42864356-42864099)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	97-774, gnl\|bosTau2\|chr15 (19253713-19254391)
	97-774, gnl\|Mm7\|chr7 (42865000-42864347)

	790-1078, gnl\|bosTau2\|chr15 (19254382-19254665)
	790-1078, gnl\|Mm7\|chr7 (42864356-42864099)