Non-Coding RNA Search

Ss1.1-reje11b_k5.5

Sequence:


               
               TGCAGTATTTCCAGTGGCCCCGTCCAGAAACCCGGCATATTCATCAGCCAGGTGAAGCCT
GGCTCCCTGTCTGCTGAGGTGGGATTGGAGACAGGGGACCAGATTGTCGAAGTCAATGGC
ATCGACTTCTCCAACCTGGACCACAAAGAGGCCGTGAACGTGCTGAAAAGTAGCCGTAGC
CTGACCATCTCCATTGTAGCTGGAGCGGGCCGGGAGCTGTTCATGACAGACCGGGAGCGG
CTGGCTGAGGTCCGGCAGCGTGAGCTACAGCGGCAGGAGCTTCTGATGCAGAAGCGGCTG
GCGATGGAATCCAACAAGATCCTCCAGGAGCAGCAGGAGATGGAGCGGCAAAGGAAGAAG
GAAATTGCCCAGAAGGCAGCAGAGGAAAATGAGAGATACCGGAAGGAGATGGAATAAATC
GTGGAGGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGTATTTCCAGTGGCCCCGTCCAGAAACCCGGCATATTCATCAGCCAGGTGAAGCCT
GGCTCCCTGTCTGCTGAGGTGGGATTGGAGACAGGGGACCAGATTGTCGAAGTCAATGGC
ATCGACTTCTCCAACCTGGACCACAAAGAGGCCGTGAACGTGCTGAAAAGTAGCCGTAGC
CTGACCATCTCCATTGTAGCTGGAGCGGGCCGGGAGCTGTTCATGACAGACCGGGAGCGG
CTGGCTGAGGTCCGGCAGCGTGAGCTACAGCGGCAGGAGCTTCTGATGCAGAAGCGGCTG
GCGATGGAATCCAACAAGATCCTCCAGGAGCAGCAGGAGATGGAGCGGCAAAGGAAGAAG
GAAATTGCCCAGAAGGCAGCAGAGGAAAATGAGAGATACCGGAAGGAGATGGAATAAATC
GTGGAGGAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-325, - strand, RNAz p=0.555923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-325, - strand, RNAz p=0.555923

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               207-350, gnl|bosTau2|chr15 (20574010-20574153)
               

               
               207-350, gnl|canFam2|chr21 (43274469-43274587)
               

               
               207-350, gnl|fr1|chrUn (6821284-6821399)
               

               
               207-350, gnl|hg17|chr11 (17500898-17501016)
               

               
               207-350, gnl|Hg17|chr11 (17501050-17500907)
               

               
               207-350, gnl|mm7|chr7 (42397620-42397736)
               

               
               207-350, gnl|Mm7|chr7 (42397770-42397627)
               

               
               207-350, gnl|monDom2|scaffold_10 (54400529-54400411)
               

               
               207-350, gnl|oryCun1|scaffold_174196 (1370-1485)
               

               
               207-350, gnl|panTro1|chr9 (17684522-17684640)
               

               
               207-350, gnl|rheMac2|chr14 (54415113-54414995)
               

               
               207-350, gnl|rn3|chr1 (96824969-96825085)
               

               
               207-350, gnl|tetNig1|chr13 (6319355-6319468)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-350, gnl|bosTau2|chr15 (20574010-20574153)
               

               
               207-350, gnl|canFam2|chr21 (43274469-43274587)
               

               
               207-350, gnl|fr1|chrUn (6821284-6821399)
               

               
               207-350, gnl|hg17|chr11 (17500898-17501016)
               

               
               207-350, gnl|Hg17|chr11 (17501050-17500907)
               

               
               207-350, gnl|mm7|chr7 (42397620-42397736)
               

               
               207-350, gnl|Mm7|chr7 (42397770-42397627)
               

               
               207-350, gnl|monDom2|scaffold_10 (54400529-54400411)
               

               
               207-350, gnl|oryCun1|scaffold_174196 (1370-1485)
               

               
               207-350, gnl|panTro1|chr9 (17684522-17684640)
               

               
               207-350, gnl|rheMac2|chr14 (54415113-54414995)
               

               
               207-350, gnl|rn3|chr1 (96824969-96825085)
               

               
               207-350, gnl|tetNig1|chr13 (6319355-6319468)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eje (0.0988338)

	207-350, gnl\|bosTau2\|chr15 (20574010-20574153)
	207-350, gnl\|canFam2\|chr21 (43274469-43274587)
	207-350, gnl\|fr1\|chrUn (6821284-6821399)
	207-350, gnl\|hg17\|chr11 (17500898-17501016)
	207-350, gnl\|Hg17\|chr11 (17501050-17500907)
	207-350, gnl\|mm7\|chr7 (42397620-42397736)
	207-350, gnl\|Mm7\|chr7 (42397770-42397627)
	207-350, gnl\|monDom2\|scaffold_10 (54400529-54400411)
	207-350, gnl\|oryCun1\|scaffold_174196 (1370-1485)
	207-350, gnl\|panTro1\|chr9 (17684522-17684640)
	207-350, gnl\|rheMac2\|chr14 (54415113-54414995)
	207-350, gnl\|rn3\|chr1 (96824969-96825085)
	207-350, gnl\|tetNig1\|chr13 (6319355-6319468)