Ss1.1-reje11b_p20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAGAAAGAAAGAAAAACTGAAGTTCAGACACACACGCGCCCACTTGTCCAG CTCCAGGATGGTGTCCCGCAAGGCTGTGGTCGTCCTGCTGGTGGTGCACGCAGCTGCCAT GCTGGCCTCCCACACGGAAGCCTTTGTTCCCATCTTTACCTACGGGGAACTTCAGAGGAT GCAGGAAAAGGAGCGGAATAAAGGGCAAAAGAAATCCCTGAGTGTCCAGCAGGCGTCGGA GGAGCTCGGCCCTCTGGACCCCTCGGAGCCCACGAAGGAAGAAGAAAGGGTGGTTATCAA GCTGCTCGCGCCTGTGGACATTGGAATCAGGATGGACTCCAGGCAGCTGGAAAAGTACCG GGCCACCCTGGAAGGGCTGCTGGGCCAGGCGCCGCAGTCCACCCAGAACCAGAATGCCGC CAAGTAACAGGCCGCTGGGGGAGAAGGAGGACACAGCTCGGACCCCCCTCCCACGCAGGG AGGGCCTAGAAATCCGCTGGGCTTGGAAGGAAAACACCCTCTCCCAAACAGCCCTCAGCC CCCCTCCCCCAGCAAATAAAGCGTGAAATAGGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAGAAAGAAAGAAAAACTGAAGTTCAGACACACACGCGCCCACTTGTCCAG CTCCAGGATGGTGTCCCGCAAGGCTGTGGTCGTCCTGCTGGTGGTGCACGCAGCTGCCAT GCTGGCCTCCCACACGGAAGCCTTTGTTCCCATCTTTACCTACGGGGAACTTCAGAGGAT GCAGGAAAAGGAGCGGAATAAAGGGCAAAAGAAATCCCTGAGTGTCCAGCAGGCGTCGGA GGAGCTCGGCCCTCTGGACCCCTCGGAGCCCACGAAGGAAGAAGAAAGGGTGGTTATCAA GCTGCTCGCGCCTGTGGACATTGGAATCAGGATGGACTCCAGGCAGCTGGAAAAGTACCG GGCCACCCTGGAAGGGCTGCTGGGCCAGGCGCCGCAGTCCACCCAGAACCAGAATGCCGC CAAGTAACAGGCCGCTGGGGGAGAAGGAGGACACAGCTCGGACCCCCCTCCCACGCAGGG AGGGCCTAGAAATCCGCTGGGCTTGGAAGGAAAACACCCTCTCCCAAACAGCCCTCAGCC CCCCTCCCCCAGCAAATAAAGCGTGAAATAGGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 53-188, gnl|bosTau2|chr23 (6314691-6314556) | |
| 53-188, gnl|canFam2|chr12 (6146729-6146849) | |
| 53-188, gnl|dasNov1|scaffold_55295 (8950-9070) | |
| 53-188, gnl|galGal2|chr26 (3117856-3117736) | |
| 53-188, gnl|hg17|chr6 (33876799-33876919) | |
| 53-188, gnl|Hg17|chr6 (33876933-33876798) | |
| 53-188, gnl|loxAfr1|scaffold_4114 (90014-90134) | |
| 53-188, gnl|mm7|chr17 (25402991-25403112) | |
| 53-188, gnl|Mm7|chr17 (25403134-25402990) | |
| 53-188, gnl|monDom2|scaffold_42 (14354268-14354148) | |
| 53-188, gnl|oryCun1|scaffold_159530 (11969-11849) | |
| 53-188, gnl|panTro1|chr5 (34322798-34322918) | |
| 53-188, gnl|rheMac2|chr4 (33510867-33510987) | |
| 53-188, gnl|rn3|chr20 (5451860-5451980) | |
| 300-409, gnl|bosTau2|chr23 (6310752-6310643) | |
| 300-409, gnl|canFam2|chr12 (6141187-6141443) | |
| 300-409, gnl|dasNov1|scaffold_197461 (3309-3543) | |
| 300-409, gnl|echTel1|scaffold_238979 (4148-3901) | |
| 300-409, gnl|galGal2|chr26 (3121030-3120771) | |
| 300-409, gnl|hg17|chr6 (33871195-33871446) | |
| 300-409, gnl|Hg17|chr6 (33871362-33871259) | |
| 300-409, gnl|mm7|chr17 (25398405-25398666) | |
| 300-409, gnl|Mm7|chr17 (25398588-25398482) | |
| 300-409, gnl|monDom2|scaffold_42 (14361501-14361221) | |
| 300-409, gnl|oryCun1|scaffold_199300 (107357-107583) | |
| 300-409, gnl|panTro1|chr5 (34317416-34317667) | |
| 300-409, gnl|rheMac2|chr4 (33505565-33505818) | |
| 300-409, gnl|rn3|chr20 (5447195-5447456) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-188, gnl|bosTau2|chr23 (6314691-6314556) | |
| 53-188, gnl|canFam2|chr12 (6146729-6146849) | |
| 53-188, gnl|dasNov1|scaffold_55295 (8950-9070) | |
| 53-188, gnl|galGal2|chr26 (3117856-3117736) | |
| 53-188, gnl|hg17|chr6 (33876799-33876919) | |
| 53-188, gnl|Hg17|chr6 (33876933-33876798) | |
| 53-188, gnl|loxAfr1|scaffold_4114 (90014-90134) | |
| 53-188, gnl|mm7|chr17 (25402991-25403112) | |
| 53-188, gnl|Mm7|chr17 (25403134-25402990) | |
| 53-188, gnl|monDom2|scaffold_42 (14354268-14354148) | |
| 53-188, gnl|oryCun1|scaffold_159530 (11969-11849) | |
| 53-188, gnl|panTro1|chr5 (34322798-34322918) | |
| 53-188, gnl|rheMac2|chr4 (33510867-33510987) | |
| 53-188, gnl|rn3|chr20 (5451860-5451980) | |
| 300-409, gnl|bosTau2|chr23 (6310752-6310643) | |
| 300-409, gnl|canFam2|chr12 (6141187-6141443) | |
| 300-409, gnl|dasNov1|scaffold_197461 (3309-3543) | |
| 300-409, gnl|echTel1|scaffold_238979 (4148-3901) | |
| 300-409, gnl|galGal2|chr26 (3121030-3120771) | |
| 300-409, gnl|hg17|chr6 (33871195-33871446) | |
| 300-409, gnl|Hg17|chr6 (33871362-33871259) | |
| 300-409, gnl|mm7|chr17 (25398405-25398666) | |
| 300-409, gnl|Mm7|chr17 (25398588-25398482) | |
| 300-409, gnl|monDom2|scaffold_42 (14361501-14361221) | |
| 300-409, gnl|oryCun1|scaffold_199300 (107357-107583) | |
| 300-409, gnl|panTro1|chr5 (34317416-34317667) | |
| 300-409, gnl|rheMac2|chr4 (33505565-33505818) | |
| 300-409, gnl|rn3|chr20 (5447195-5447456) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| cje (0.165235) | |
| eje (0.0988338) |