Non-Coding RNA Search

Ss1.1-reje12b_d15.5

Sequence:


               
               GGTAGAGAACTTGTGTTTACAGAAGTCAATGTGATAGTTTTGTTTTGTACCTTTTATTGC
ATTTTGGCTGATCTGCTTAAGTGGCAGCCTAATTATTTTGCTACTCCTGAAAAATACTAC
TCTCTTTTGGGAGGATAACAGGTGGCAATCCTAGTTAACTGCTATGCAGCTCTCACCTTG
TAGTAGCACAGCATGGAAATATTTCTCACAGTTGTTTCACTGAGGTCTCTGCCAAGGTAC
AAGTTTGGTAGGACAAGCCTGTGAATAATAACTCACATGCAAAAATGAATAAATATTATC
ATGCAAACATATATACACACATACACACATATATATGTGTGTATGTGTATATATATACAT
ATACATATATATATATATATATATGGCTCAGTGGGTTTTGCATGTGTTCAGTCTTTGCAG
AATACAGCTTAGTAAAGAATTATCCTTAACGATTTTGCAAGAAACCTCGACCACTTAGAA
ATTTTACTTTTTATGCTTGGAACTGGTCTCCAAGTCATACAGCCAAAGTATTGAATGTTC
AGGCATTTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGAGAACTTGTGTTTACAGAAGTCAATGTGATAGTTTTGTTTTGTACCTTTTATTGC
ATTTTGGCTGATCTGCTTAAGTGGCAGCCTAATTATTTTGCTACTCCTGAAAAATACTAC
TCTCTTTTGGGAGGATAACAGGTGGCAATCCTAGTTAACTGCTATGCAGCTCTCACCTTG
TAGTAGCACAGCATGGAAATATTTCTCACAGTTGTTTCACTGAGGTCTCTGCCAAGGTAC
AAGTTTGGTAGGACAAGCCTGTGAATAATAACTCACATGCAAAAATGAATAAATATTATC
ATGCAAACATATATACACACATACACACATATATATGTGTGTATGTGTATATATATACAT
ATACATATATATATATATATATATGGCTCAGTGGGTTTTGCATGTGTTCAGTCTTTGCAG
AATACAGCTTAGTAAAGAATTATCCTTAACGATTTTGCAAGAAACCTCGACCACTTAGAA
ATTTTACTTTTTATGCTTGGAACTGGTCTCCAAGTCATACAGCCAAAGTATTGAATGTTC
AGGCATTTTCCT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-296, gnl|bosTau2|chr3 (53106882-53106603)
               

               
               1-296, gnl|Hg17|chr1 (67864817-67865108)
               

               
               1-296, gnl|Mm7|chr6 (67018395-67017719)
               


               
               367-551, gnl|bosTau2|chr3 (53106606-53106430)
               

               
               367-551, gnl|Hg17|chr1 (67865105-67865295)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-296, gnl|bosTau2|chr3 (53106882-53106603)
               

               
               1-296, gnl|Hg17|chr1 (67864817-67865108)
               

               
               1-296, gnl|Mm7|chr6 (67018395-67017719)
               


               
               367-551, gnl|bosTau2|chr3 (53106606-53106430)
               

               
               367-551, gnl|Hg17|chr1 (67865105-67865295)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               eje (0.0988338)

	1-296, gnl\|bosTau2\|chr3 (53106882-53106603)
	1-296, gnl\|Hg17\|chr1 (67864817-67865108)
	1-296, gnl\|Mm7\|chr6 (67018395-67017719)

	367-551, gnl\|bosTau2\|chr3 (53106606-53106430)
	367-551, gnl\|Hg17\|chr1 (67865105-67865295)