Ss1.1-reje12b_d22.5
|
AACTAACTACCAGAAAGTGAGGGATCTTTAAAAAAAAAAAAAAAAAAGTATACTTTTGTT
TCAGGGGGCTTTAAAAGACAAGATTAAACTCTATCTGAGGCACTGATGATAAGTCTAAGG
TTAAAATATATAAATTAAGATTTTAAAAGATGAAAAGTAACCCCTTCTTCCTTAACCAGC
TCCTTTACCCTGCCTGGTGTATGAGTTGCTCATCAACTGTAGGATGACCAGCACTAATGC
ATGTGGTATGGGTTAGGTTTGCCTGCCCCCACTCCCCCCACCATTTCCAGAGTAAGAATC
TGGCTCCTCTTTCCCTAGGTCAAAGCTGGTTGCAGAGAATCTGCAGTCAGTTCAGAGCTT
TTGGTTTTCTATTCTGCCCAATTCTTAATAAGCCAGCAAACAGGACTCTACCCCTGCTGT
TTCCATAGGAATCATGTTGGATTGTCGGCTGTACCAAGCCCCATTAATCTCTCCGTGCAC
ACAAGACACTTCCTAGCAAGACCTATGTTGGTTGCTTTGGCTTTTTTTTTTATTTTATTA
TTATTTTTTTTATGCTACCAGGTGATCATAAAGGCCATGGCATTTGTTGTGACTGGCACC
CAGTGTCTGACTTTTTTCTCTTCTTTAAATTACCCTACTAAAATTAACATCTGAGAGTGT
TCTATTCCCTACTACTTGAATACTCACGTCTTTCGGGTTTTCTGTACCTGCTGCACCTCA
AGCCAAGGTTGCTCTATATCTCCCCCCTTGGTCTCTATTAGAGACCTCTTCCAGCAGGTC
GTATAATAGAGCACTGTCTGATCTGTGGTCTTTGCCAGTTATTTGGCTTTATCAGTGCTT
AACATGAACTGAGCTTTTCCCTGGGATACAAACCACTATCCTATGACCTTTTTTTTTTCT
TTTTTTTTTTTCCTAAAATGCTGTGGGCTATAGAATAGGATCTTGGGAATGACCAGCATG
ATATTTTCATGGCCTGATCCCAGGGGTACTAACTAGCACCTCTTTCTGAACAGGGAAATG
ATTTAAGATTGGACATGATCTCCTTCAAATATCAGGTACTAGGGCCGAGGGCGTTAAAAC
TAGTAAACCTCCCTCATCACCCTCTGCCGTAAGCAAATAACCCTTTATTTATCAGGGTCC
TCATCCTGCCTTTCCCCAAGAGCTCACAGTACAGTGTTTGTTGTAGAAGCCCCATGTGCA
CAGGTTTCCAGTGACTCCGAATGCTCTTTTCTTTTTAAGAAAGGATTAAAATACACTCCT
GCTGTGCCCCCTTCCTCCTTTGCAACTCCTGCCTGTTTGTGTGGATCCCTAATCCCCAGA
ACCACACTGTTGAGATGGATAATACTGTCTGTAAACCTCTGGGTAACTGTCAAGTCATGA
TGCAGACTTCAGGTTGTTCTGTATAAAATGCAAAATAAATGTTTTTATTAACAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACTAACTACCAGAAAGTGAGGGATCTTTAAAAAAAAAAAAAAAAAAGTATACTTTTGTT
TCAGGGGGCTTTAAAAGACAAGATTAAACTCTATCTGAGGCACTGATGATAAGTCTAAGG
TTAAAATATATAAATTAAGATTTTAAAAGATGAAAAGTAACCCCTTCTTCCTTAACCAGC
TCCTTTACCCTGCCTGGTGTATGAGTTGCTCATCAACTGTAGGATGACCAGCACTAATGC
ATGTGGTATGGGTTAGGTTTGCCTGCCCCCACTCCCCCCACCATTTCCAGAGTAAGAATC
TGGCTCCTCTTTCCCTAGGTCAAAGCTGGTTGCAGAGAATCTGCAGTCAGTTCAGAGCTT
TTGGTTTTCTATTCTGCCCAATTCTTAATAAGCCAGCAAACAGGACTCTACCCCTGCTGT
TTCCATAGGAATCATGTTGGATTGTCGGCTGTACCAAGCCCCATTAATCTCTCCGTGCAC
ACAAGACACTTCCTAGCAAGACCTATGTTGGTTGCTTTGGCTTTTTTTTTTATTTTATTA
TTATTTTTTTTATGCTACCAGGTGATCATAAAGGCCATGGCATTTGTTGTGACTGGCACC
CAGTGTCTGACTTTTTTCTCTTCTTTAAATTACCCTACTAAAATTAACATCTGAGAGTGT
TCTATTCCCTACTACTTGAATACTCACGTCTTTCGGGTTTTCTGTACCTGCTGCACCTCA
AGCCAAGGTTGCTCTATATCTCCCCCCTTGGTCTCTATTAGAGACCTCTTCCAGCAGGTC
GTATAATAGAGCACTGTCTGATCTGTGGTCTTTGCCAGTTATTTGGCTTTATCAGTGCTT
AACATGAACTGAGCTTTTCCCTGGGATACAAACCACTATCCTATGACCTTTTTTTTTTCT
TTTTTTTTTTTCCTAAAATGCTGTGGGCTATAGAATAGGATCTTGGGAATGACCAGCATG
ATATTTTCATGGCCTGATCCCAGGGGTACTAACTAGCACCTCTTTCTGAACAGGGAAATG
ATTTAAGATTGGACATGATCTCCTTCAAATATCAGGTACTAGGGCCGAGGGCGTTAAAAC
TAGTAAACCTCCCTCATCACCCTCTGCCGTAAGCAAATAACCCTTTATTTATCAGGGTCC
TCATCCTGCCTTTCCCCAAGAGCTCACAGTACAGTGTTTGTTGTAGAAGCCCCATGTGCA
CAGGTTTCCAGTGACTCCGAATGCTCTTTTCTTTTTAAGAAAGGATTAAAATACACTCCT
GCTGTGCCCCCTTCCTCCTTTGCAACTCCTGCCTGTTTGTGTGGATCCCTAATCCCCAGA
ACCACACTGTTGAGATGGATAATACTGTCTGTAAACCTCTGGGTAACTGTCAAGTCATGA
TGCAGACTTCAGGTTGTTCTGTATAAAATGCAAAATAAATGTTTTTATTAACAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1440, gnl|bosTau2|chr10 (64492680-64494099) |
|
1-1440, gnl|canFam2|chr17 (59060755-59059476) |
|
1-1440, gnl|dasNov1|scaffold_5330 (84003-82710) |
|
1-1440, gnl|echTel1|scaffold_309954 (142034-140844) |
|
1-1440, gnl|Hg17|chr19 (18003857-18005240) |
|
1-1440, gnl|hg17|chr6 (81320861-81322102) |
|
1-1440, gnl|loxAfr1|scaffold_34003 (6656-7917) |
|
1-1440, gnl|mm7|chr10 (99317822-99319056) |
|
1-1440, gnl|Mm7|chr10 (99319181-99317822) |
|
1-1440, gnl|oryCun1|scaffold_128565 (5411-4164) |
|
1-1440, gnl|panTro1|chr5 (82890191-82891434) |
|
1-1440, gnl|rheMac2|chr4 (76626354-76627593) |
|
1-1440, gnl|rn3|chr7 (37433771-37434973) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1440, gnl|bosTau2|chr10 (64492680-64494099) |
|
1-1440, gnl|canFam2|chr17 (59060755-59059476) |
|
1-1440, gnl|dasNov1|scaffold_5330 (84003-82710) |
|
1-1440, gnl|echTel1|scaffold_309954 (142034-140844) |
|
1-1440, gnl|Hg17|chr19 (18003857-18005240) |
|
1-1440, gnl|hg17|chr6 (81320861-81322102) |
|
1-1440, gnl|loxAfr1|scaffold_34003 (6656-7917) |
|
1-1440, gnl|mm7|chr10 (99317822-99319056) |
|
1-1440, gnl|Mm7|chr10 (99319181-99317822) |
|
1-1440, gnl|oryCun1|scaffold_128565 (5411-4164) |
|
1-1440, gnl|panTro1|chr5 (82890191-82891434) |
|
1-1440, gnl|rheMac2|chr4 (76626354-76627593) |
|
1-1440, gnl|rn3|chr7 (37433771-37434973) |
|
hea (1.22699) |
|
nms (1.06929) |
|
hlv (0.835538) |
|
fbs (0.701385) |
|
ssp (0.677599) |
|
nco (0.646935) |
|
mas (0.630915) |
|
fcc (0.593354) |
|
fat (0.58971) |
|
hyp (0.42851) |
|
jej (0.395687) |
|
cly (0.361925) |
|
ton (0.351) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
sme (0.305437) |
|
isp (0.300752) |
|
eje (0.296501) |
|
pty (0.285429) |
|
cga (0.279096) |
|
ova (0.258264) |
|
sug (0.254582) |
|
thg (0.253582) |
|
bla (0.248694) |
|
med (0.232504) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
ill (0.175593) |
|
duo (0.172801) |
|
csp (0.161186) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
hea (1.22699) |
|
nms (1.06929) |
|
hlv (0.835538) |
|
fbs (0.701385) |
|
ssp (0.677599) |
|
nco (0.646935) |
|
mas (0.630915) |
|
fcc (0.593354) |
|
fat (0.58971) |
|
hyp (0.42851) |
|
jej (0.395687) |
|
cly (0.361925) |
|
ton (0.351) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
sme (0.305437) |
|
isp (0.300752) |
|
eje (0.296501) |
|
pty (0.285429) |
|
cga (0.279096) |
|
ova (0.258264) |
|
sug (0.254582) |
|
thg (0.253582) |
|
bla (0.248694) |
|
med (0.232504) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
ill (0.175593) |
|
duo (0.172801) |
|
csp (0.161186) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
