Non-Coding RNA Search

Ss1.1-reje12b_g22.5

Sequence:


               
               TTTTTTTTTTTTTTTTAATCTGAATCGGGAGCCACACTTAGCCCTCTCCCTCTCCACAGT
GTCAGAACTTCCTTCTCTTTGGAGAAGGGAGAGGTCTCTTGGAGACACAGAGGGTTTTAC
TTTGGATGACCTCGAGAGAAACAGCCCAAGAAGCCCGCCTTCTGGTCCCAGCCTGCAGAC
CCCACAGCAGTTGGTCGGCCCCGCTGCACAGCGTCCATCGCCTGCATCCAGCCAACGGGC
AGGAGAGGGGGCCTCTGTTCTTCCCCATCACCGCCATCCCTCCTGTCCTAACACCTCCAT
TTTCAGTCAGTGTTTTCCAGCAACGGTACCGTTTACACAGTCGCCTCAGACACACCATTT
CACCTCCCTTGCTGAGCTGTTAGCCTTAGAATGATTGCAGTGAACATTGTTTACACTCTG
TGAATCCATTCCCACCAGTCCATTCCAGTTGGCACCAGCCGGAACCATTCGGTACCTGGT
GTTAACTGGAGCCCTGTTTACAAGGCGGAGTCGGGTCTCGCTGACTTCTCTTCACTTGAG
GTCACATTTTTCCCCTGTGGGGAAATAAACTGACTTTGGACTGCTTCAGTCTCTGCCATC
TTCCGTGACTGTGTCTGTTCCTGCCTTCCCCGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTAATCTGAATCGGGAGCCACACTTAGCCCTCTCCCTCTCCACAGT
GTCAGAACTTCCTTCTCTTTGGAGAAGGGAGAGGTCTCTTGGAGACACAGAGGGTTTTAC
TTTGGATGACCTCGAGAGAAACAGCCCAAGAAGCCCGCCTTCTGGTCCCAGCCTGCAGAC
CCCACAGCAGTTGGTCGGCCCCGCTGCACAGCGTCCATCGCCTGCATCCAGCCAACGGGC
AGGAGAGGGGGCCTCTGTTCTTCCCCATCACCGCCATCCCTCCTGTCCTAACACCTCCAT
TTTCAGTCAGTGTTTTCCAGCAACGGTACCGTTTACACAGTCGCCTCAGACACACCATTT
CACCTCCCTTGCTGAGCTGTTAGCCTTAGAATGATTGCAGTGAACATTGTTTACACTCTG
TGAATCCATTCCCACCAGTCCATTCCAGTTGGCACCAGCCGGAACCATTCGGTACCTGGT
GTTAACTGGAGCCCTGTTTACAAGGCGGAGTCGGGTCTCGCTGACTTCTCTTCACTTGAG
GTCACATTTTTCCCCTGTGGGGAAATAAACTGACTTTGGACTGCTTCAGTCTCTGCCATC
TTCCGTGACTGTGTCTGTTCCTGCCTTCCCCGGCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-301, - strand, RNAz p=0.998388
               

               
               382-636, - strand, RNAz p=0.994436

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-301, - strand, RNAz p=0.998388
               

               
               382-636, - strand, RNAz p=0.994436

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               32-125, + strand, RNAmicro p=0.973762

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               32-125, + strand, RNAmicro p=0.973762

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr13 (42345472-42346109)
               

               
               1-636, gnl|Hg17|chr20 (30247673-30247033)
               

               
               1-636, gnl|Mm7|chr2 (152972117-152971481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr13 (42345472-42346109)
               

               
               1-636, gnl|Hg17|chr20 (30247673-30247033)
               

               
               1-636, gnl|Mm7|chr2 (152972117-152971481)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-301, - strand, RNAz p=0.998388
	382-636, - strand, RNAz p=0.994436

	1-636, gnl\|bosTau2\|chr13 (42345472-42346109)
	1-636, gnl\|Hg17\|chr20 (30247673-30247033)
	1-636, gnl\|Mm7\|chr2 (152972117-152971481)