Non-Coding RNA Search

Ss1.1-reje12b_l5.5

Sequence:


               
               AAACTACTTAGAAAGAGAGGTCCCCCTTCTGCTCATCCCCACACCTGAAGAGCACCCCTG
CACATCCCCTCTCCAGACCACAGCTTCTCCTGGGCACCATGAACTGCGCTTCCCAGCCCT
TCTTCACTGGTGCCCATGGAGGACCCCCAACATATGAGATGCTCAAGGAGGAGCACGAGG
TGGCCGTGCTGGGGGCTCCCCAGACCTCAGCCCCCGTGGCCACCACGGTGATCAACATCC
GAAGCGAGACCTCCGTGCCCGACCACGTCGTCTGGTCCCTGTTCAACACCCTCTTCATGA
ACTGGTGCTGCCTGGGCTTCGTGGCTTTCGCCTACTCCGTGAAGGCGAGGGACCGGAAGA
TGGTGGGAGACATCATTGGGGCCCAGAGCTATGCCTCCACCGCCAAGTGCCTGAACATCT
GGGCTCTGGTCCTGGGCCTCCTTCTGACCATCGGAGTCATCATCGTTTTGGTGTTTGTAT
CCCTGGTAATTTTCCAAGCAGTTCTGCAGCTCATAAAGGATTACAGAGGCTACTAGCATC
TGCCTGCGGCCTGAGGCAGCCCCTCCTTTCACAGCAGCACATACACATGTGTGTCTACAG
TTTAATAAAAGAAAGCCTTTTCCTCTGTCCACAACTGGGTTCAATAAAGTGCTCTTGCCT
GAAAGCAGAGAGGCAGGGCTGGGGAACACCCACCACCAAGACCTTCCAGAGAAGTTACAG
GCTCGCCTTACAGACGGGGGCTGGTGCCAGCAGAGGGTCAGTCACTAGGCATCCGCAGCT
GATCGGTTGCCAGACCCGGGTTTCCCAGGGAGGGAAGAAACCGAGTTCCAGGCGGTCCCA
GGATGGCCAGGGGGTGTGAGTCAGTTCATATCCCCGGGGCTTCCTGGCCCCATTTCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTACTTAGAAAGAGAGGTCCCCCTTCTGCTCATCCCCACACCTGAAGAGCACCCCTG
CACATCCCCTCTCCAGACCACAGCTTCTCCTGGGCACCATGAACTGCGCTTCCCAGCCCT
TCTTCACTGGTGCCCATGGAGGACCCCCAACATATGAGATGCTCAAGGAGGAGCACGAGG
TGGCCGTGCTGGGGGCTCCCCAGACCTCAGCCCCCGTGGCCACCACGGTGATCAACATCC
GAAGCGAGACCTCCGTGCCCGACCACGTCGTCTGGTCCCTGTTCAACACCCTCTTCATGA
ACTGGTGCTGCCTGGGCTTCGTGGCTTTCGCCTACTCCGTGAAGGCGAGGGACCGGAAGA
TGGTGGGAGACATCATTGGGGCCCAGAGCTATGCCTCCACCGCCAAGTGCCTGAACATCT
GGGCTCTGGTCCTGGGCCTCCTTCTGACCATCGGAGTCATCATCGTTTTGGTGTTTGTAT
CCCTGGTAATTTTCCAAGCAGTTCTGCAGCTCATAAAGGATTACAGAGGCTACTAGCATC
TGCCTGCGGCCTGAGGCAGCCCCTCCTTTCACAGCAGCACATACACATGTGTGTCTACAG
TTTAATAAAAGAAAGCCTTTTCCTCTGTCCACAACTGGGTTCAATAAAGTGCTCTTGCCT
GAAAGCAGAGAGGCAGGGCTGGGGAACACCCACCACCAAGACCTTCCAGAGAAGTTACAG
GCTCGCCTTACAGACGGGGGCTGGTGCCAGCAGAGGGTCAGTCACTAGGCATCCGCAGCT
GATCGGTTGCCAGACCCGGGTTTCCCAGGGAGGGAAGAAACCGAGTTCCAGGCGGTCCCA
GGATGGCCAGGGGGTGTGAGTCAGTTCATATCCCCGGGGCTTCCTGGCCCCATTTCAGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30584591|gb|AAP36548.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30584591|gb|AAP36548.1|

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               76-620, gnl|bosTau2|chr14 (38477958-38478507)
               

               
               76-620, gnl|Hg17|chr2 (60822057-60821548)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-620, gnl|bosTau2|chr14 (38477958-38478507)
               

               
               76-620, gnl|Hg17|chr2 (60822057-60821548)

Expressed library(ies): 41 entry(ies)

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Expressed library(ies): 41 entry(ies)

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               cag (8.0133)
               

               
               cga (4.18644)
               

               
               csp (3.06254)
               

               
               col (2.5351)
               

               
               clu (2.27327)
               

               
               nmm (2.25764)
               

               
               nco (1.77907)
               

               
               cly (1.68899)
               

               
               nje (1.49328)
               

               
               jca (1.48148)
               

               
               cty (1.35304)
               

               
               cov (1.18937)
               

               
               cli (0.91687)
               

               
               ill (0.877963)
               

               
               elu (0.770713)
               

               
               eep (0.735384)
               

               
               hlv (0.696282)
               

               
               nca (0.684369)
               

               
               mas (0.630915)
               

               
               eru (0.60024)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (8.0133)
               

               
               cga (4.18644)
               

               
               csp (3.06254)
               

               
               col (2.5351)
               

               
               clu (2.27327)
               

               
               nmm (2.25764)
               

               
               nco (1.77907)
               

               
               cly (1.68899)
               

               
               nje (1.49328)
               

               
               jca (1.48148)
               

               
               cty (1.35304)
               

               
               cov (1.18937)
               

               
               cli (0.91687)
               

               
               ill (0.877963)
               

               
               elu (0.770713)
               

               
               eep (0.735384)
               

               
               hlv (0.696282)
               

               
               nca (0.684369)
               

               
               mas (0.630915)
               

               
               eru (0.60024)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	76-620, gnl\|bosTau2\|chr14 (38477958-38478507)
	76-620, gnl\|Hg17\|chr2 (60822057-60821548)

	cag (8.0133)
	cga (4.18644)
	csp (3.06254)
	col (2.5351)
	clu (2.27327)
	nmm (2.25764)
	nco (1.77907)
	cly (1.68899)
	nje (1.49328)
	jca (1.48148)
	cty (1.35304)
	cov (1.18937)
	cli (0.91687)
	ill (0.877963)
	elu (0.770713)
	eep (0.735384)
	hlv (0.696282)
	nca (0.684369)
	mas (0.630915)
	eru (0.60024)
	hyp (0.571347)
	lnt (0.569233)
	ton (0.526501)
	duo (0.518403)
	mcp (0.511945)
	jej (0.494609)
	eje (0.494169)
	pla (0.401016)
	ute (0.398353)
	nlu (0.383362)
	med (0.348756)
	eye (0.341006)
	fhi (0.339155)
	cst (0.280073)
	ece (0.229305)
	nbm (0.198649)
	nep (0.183925)
	cje (0.165235)
	fat (0.147427)
	pgl (0.118483)
	ebs (0.118301)