Non-Coding RNA Search

Ss1.1-reje12b_m18.5

Sequence:


               
               TTTTTTTTTTGGAAAGAATGTCTTGGAATGCTCGTCTCCTTTTAAAGCCGTTTCTTGCAG
GGAAGCGGGGGCAAGAAACGGTTTTTCCCTCCCCACCTAAGAAGCCCTCCGTCAACCACA
GGTGGATCCTTGTGCAAATAACTTGCATTGCTGACGCCACTGCTCGCCTTGGGGGAGAAG
CCAGAAGGAGCCCAGAAGCGGCGGCTCCAGGCTCTCGGCCTCCACGTCCCCCTCCGCCTC
CTCTCCTTCCTTCTCTGCGGTCCTTCTGGTTTGGTTTCCAGCTTCACTTGGACGTTTTAG
GCGGGGGGTCTTCTCCCGAGCCCCAGCCCCGGCCGTCTCCCCATCTCTACTGTAAACTTC
GTGCTGGGAGACGGGGGCGGGCAGGGCGCCGCGGGGACGGGAAGGCCCGCCGGGCGCGCG
GATTCAGGATTGCGGTGACGCAGAAAGGTTAAGGCACTTTTTGAAACGATAGCAAGGCTC
ATCCTGTTATTTATTCTACGTTCTCTCCCTAATAATCGAAACACCGCATAGGCTCCTCCG
TTTATCAGTATTAATGGTGTAACTTTGTTGGCAATATTTGCCGCGTAGAATTTTTTTTTT
TTTAGATATCCATTGTAAATTTGAAACTAAGTCCGATCTGTGTAAAAACAAATTTCCATA
TGTTTTATATAAATATATATATATAAAATGAAGGATTCCTTCCCTTTTTTAGTATTTTGG
CTGCTGGGGTGCAGCGTTTGTGACACGTATTTTAAATTTCCTTCTGCACTGTGTAAAAAT
GACAATTTAAGGATGTTTTTGCCTTTTGTGTATTTTTTCCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGGAAAGAATGTCTTGGAATGCTCGTCTCCTTTTAAAGCCGTTTCTTGCAG
GGAAGCGGGGGCAAGAAACGGTTTTTCCCTCCCCACCTAAGAAGCCCTCCGTCAACCACA
GGTGGATCCTTGTGCAAATAACTTGCATTGCTGACGCCACTGCTCGCCTTGGGGGAGAAG
CCAGAAGGAGCCCAGAAGCGGCGGCTCCAGGCTCTCGGCCTCCACGTCCCCCTCCGCCTC
CTCTCCTTCCTTCTCTGCGGTCCTTCTGGTTTGGTTTCCAGCTTCACTTGGACGTTTTAG
GCGGGGGGTCTTCTCCCGAGCCCCAGCCCCGGCCGTCTCCCCATCTCTACTGTAAACTTC
GTGCTGGGAGACGGGGGCGGGCAGGGCGCCGCGGGGACGGGAAGGCCCGCCGGGCGCGCG
GATTCAGGATTGCGGTGACGCAGAAAGGTTAAGGCACTTTTTGAAACGATAGCAAGGCTC
ATCCTGTTATTTATTCTACGTTCTCTCCCTAATAATCGAAACACCGCATAGGCTCCTCCG
TTTATCAGTATTAATGGTGTAACTTTGTTGGCAATATTTGCCGCGTAGAATTTTTTTTTT
TTTAGATATCCATTGTAAATTTGAAACTAAGTCCGATCTGTGTAAAAACAAATTTCCATA
TGTTTTATATAAATATATATATATAAAATGAAGGATTCCTTCCCTTTTTTAGTATTTTGG
CTGCTGGGGTGCAGCGTTTGTGACACGTATTTTAAATTTCCTTCTGCACTGTGTAAAAAT
GACAATTTAAGGATGTTTTTGCCTTTTGTGTATTTTTTCCTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               705-817, - strand, RNAz p=0.550309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               705-817, - strand, RNAz p=0.550309

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-827, gnl|bosTau2|chr18 (9479299-9480131)
               

               
               4-827, gnl|Hg17|chr16 (85104657-85105490)
               

               
               4-827, gnl|Mm7|chr8 (119720482-119721263)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-827, gnl|bosTau2|chr18 (9479299-9480131)
               

               
               4-827, gnl|Hg17|chr16 (85104657-85105490)
               

               
               4-827, gnl|Mm7|chr8 (119720482-119721263)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.182715)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eje (0.0988338)

	4-827, gnl\|bosTau2\|chr18 (9479299-9480131)
	4-827, gnl\|Hg17\|chr16 (85104657-85105490)
	4-827, gnl\|Mm7\|chr8 (119720482-119721263)

	sag (0.182715)
	csp (0.161186)
	cli (0.152812)
	pla (0.133672)
	cly (0.120642)
	eje (0.0988338)