Non-Coding RNA Search

Ss1.1-reje13b_m11.5

Sequence:


               
               GGAGATCGCGACTGCGGGCGGTCCCCAGCGGACCTCTGAGCAGATGCAGGATGGAGCGAG
AAGGCGGCCTCTTTTTCCGCGGTTTCCAGAACCGCTCCCACGGTGAAGATAAAGCTTCGG
AAAAGAAAGTCGACCTTGTACCTCAGCCCCCAGGAACGCACCGGGAGCTGCCGAGATCTT
CTTGGCGAAAACATTTATCTGGTCTTGTTTACCATAGCATTACGAATATGTAACTGCTTT
TTAGTCCAGACAAGTTTTGTTCCAGATGAATACTGGCAATCTCTTGAAGTTGCACATCAC
ATGGTTTTCAATTATGGCTATTTGACCTGGGAATGGACAGAAAGATTGAGGGGTTACACT
TACCCATTAATCTTTGCAAGCATTTACAAGATTCTGCATCTTTTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATCGCGACTGCGGGCGGTCCCCAGCGGACCTCTGAGCAGATGCAGGATGGAGCGAG
AAGGCGGCCTCTTTTTCCGCGGTTTCCAGAACCGCTCCCACGGTGAAGATAAAGCTTCGG
AAAAGAAAGTCGACCTTGTACCTCAGCCCCCAGGAACGCACCGGGAGCTGCCGAGATCTT
CTTGGCGAAAACATTTATCTGGTCTTGTTTACCATAGCATTACGAATATGTAACTGCTTT
TTAGTCCAGACAAGTTTTGTTCCAGATGAATACTGGCAATCTCTTGAAGTTGCACATCAC
ATGGTTTTCAATTATGGCTATTTGACCTGGGAATGGACAGAAAGATTGAGGGGTTACACT
TACCCATTAATCTTTGCAAGCATTTACAAGATTCTGCATCTTTTGGGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               180-315, gnl|bosTau2|chr10 (38711335-38711470)
               

               
               180-315, gnl|Hg17|chr15 (53399766-53399904)
               

               
               180-315, gnl|Mm7|chr9 (73071256-73071118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-315, gnl|bosTau2|chr10 (38711335-38711470)
               

               
               180-315, gnl|Hg17|chr15 (53399766-53399904)
               

               
               180-315, gnl|Mm7|chr9 (73071256-73071118)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mgp (0.230681)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               eje (0.0988338)

	180-315, gnl\|bosTau2\|chr10 (38711335-38711470)
	180-315, gnl\|Hg17\|chr15 (53399766-53399904)
	180-315, gnl\|Mm7\|chr9 (73071256-73071118)