Non-Coding RNA Search

Ss1.1-reje14b_a20.5

Sequence:


               
               AGATGGGGACCCCTCGAGCTTCTTGTCCCGCCAGCTGCCCTTCCTGGGTACCCTGAGGCG
GCTAGAAGACCGGGCCACCGCCTACGTGTGCGAGAATCAAGCCTGCTCCATGCCCATCAC
GGAGCCCTGTGAACTGCGGAAACTGCTGCATCAGTGACTGCCTCCCCCACCTCAGGCTGG
GGCAGAAGGCGGAGCTTCCCAGTCAACCAGAGACTCAGGCCCTGCAGGGTCCTGCAGAGC
CTGCGGCCATCCCAGGGCACCCTGTCACCAGGTGACCTCGGCTATCCTTGATGCCCCCCC
ATGGGCACCCACTCACCCTGGAATAAACCTAACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGGGGACCCCTCGAGCTTCTTGTCCCGCCAGCTGCCCTTCCTGGGTACCCTGAGGCG
GCTAGAAGACCGGGCCACCGCCTACGTGTGCGAGAATCAAGCCTGCTCCATGCCCATCAC
GGAGCCCTGTGAACTGCGGAAACTGCTGCATCAGTGACTGCCTCCCCCACCTCAGGCTGG
GGCAGAAGGCGGAGCTTCCCAGTCAACCAGAGACTCAGGCCCTGCAGGGTCCTGCAGAGC
CTGCGGCCATCCCAGGGCACCCTGTCACCAGGTGACCTCGGCTATCCTTGATGCCCCCCC
ATGGGCACCCACTCACCCTGGAATAAACCTAACAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545614|emb|CAH56380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545614|emb|CAH56380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-332, - strand, RNAz p=0.989067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-332, - strand, RNAz p=0.989067

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-332, gnl|bosTau2|chr19 (28868918-28868588)
               

               
               2-332, gnl|canFam2|chr9 (29800222-29799865)
               

               
               2-332, gnl|dasNov1|scaffold_16620 (22797-23120)
               

               
               2-332, gnl|echTel1|scaffold_303981 (14354-14676)
               

               
               2-332, gnl|Hg17|chr17 (45987867-45988198)
               

               
               2-332, gnl|hg17|chr21 (38531829-38532188)
               

               
               2-332, gnl|loxAfr1|scaffold_16228 (5899-5543)
               

               
               2-332, gnl|mm7|chr11 (94587945-94588302)
               

               
               2-332, gnl|Mm7|chr11 (94588290-94587957)
               

               
               2-332, gnl|oryCun1|scaffold_213401 (73509-73156)
               

               
               2-332, gnl|panTro1|chr22 (38571659-38572018)
               

               
               2-332, gnl|rheMac2|chr3 (8389605-8389244)
               

               
               2-332, gnl|rn3|chr10 (83132030-83132346)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-332, gnl|bosTau2|chr19 (28868918-28868588)
               

               
               2-332, gnl|canFam2|chr9 (29800222-29799865)
               

               
               2-332, gnl|dasNov1|scaffold_16620 (22797-23120)
               

               
               2-332, gnl|echTel1|scaffold_303981 (14354-14676)
               

               
               2-332, gnl|Hg17|chr17 (45987867-45988198)
               

               
               2-332, gnl|hg17|chr21 (38531829-38532188)
               

               
               2-332, gnl|loxAfr1|scaffold_16228 (5899-5543)
               

               
               2-332, gnl|mm7|chr11 (94587945-94588302)
               

               
               2-332, gnl|Mm7|chr11 (94588290-94587957)
               

               
               2-332, gnl|oryCun1|scaffold_213401 (73509-73156)
               

               
               2-332, gnl|panTro1|chr22 (38571659-38572018)
               

               
               2-332, gnl|rheMac2|chr3 (8389605-8389244)
               

               
               2-332, gnl|rn3|chr10 (83132030-83132346)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	2-332, gnl\|bosTau2\|chr19 (28868918-28868588)
	2-332, gnl\|canFam2\|chr9 (29800222-29799865)
	2-332, gnl\|dasNov1\|scaffold_16620 (22797-23120)
	2-332, gnl\|echTel1\|scaffold_303981 (14354-14676)
	2-332, gnl\|Hg17\|chr17 (45987867-45988198)
	2-332, gnl\|hg17\|chr21 (38531829-38532188)
	2-332, gnl\|loxAfr1\|scaffold_16228 (5899-5543)
	2-332, gnl\|mm7\|chr11 (94587945-94588302)
	2-332, gnl\|Mm7\|chr11 (94588290-94587957)
	2-332, gnl\|oryCun1\|scaffold_213401 (73509-73156)
	2-332, gnl\|panTro1\|chr22 (38571659-38572018)
	2-332, gnl\|rheMac2\|chr3 (8389605-8389244)
	2-332, gnl\|rn3\|chr10 (83132030-83132346)

	ece (0.229305)
	lyg (0.133103)
	ute (0.132784)
	eru (0.120048)
	eje (0.0988338)