Ss1.1-reje14b_n21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGGAGGGGCGCAGTCTCCTGAAGGCACTTATCAAGAAATCTGCACTGCGTGGAGAGC AAGTCCACATCCTGGGCTGTGAAGTGAGCGAAGAAGAGTTTCGTGAAGGTTTTGACTCCG ACGTCAACAGACGGCTGATTTACCATGATCTCTTCAGAGACCCTCTCAACTGGTCAAAGA CTGGGGAAGCTCCTCCTGGGGGGCCCCTGGAAGCCTTGAGAGCCCTGTGCAGGAGGACAG TCCCTGGCCCTGTCACCATTGCTGTGGATTCTCTCAGTTGGCTGCTGCTTCGCTTTCCCT GCACCGCACTCTGCCAGAGCCTGTACGCGCTGAGCCAGCAGGACTCCTCCCGTGGTGACA GCTCCCCAGGAGAGCCGGTGCGTGTGCTAGGCCTGCTGCATGAAGAGCTTCATGGCCCAG GCCCCTTGGGAGCCTTGAGCAGCCTTGCTCAGACCGAGGTGACCCTGAGTGGTACCATGG GCCAGGCCTCGGCCCACATCCTCTATCGGAGGCCCCAGCAACGCCCAGCCCGCCAGACTC AGTGGTTCGCCATCCTTCCTGACTTCAGCCTGGATCTCCAAGGGGGGCCGCCGCTCGAGT CCCAGCCCCACCCGGATCCTCACACTCCCCCGGCGGACCCCACGACTCATTTGACCTTCA ACCTTCACCTGTCCAAGAAAGAGAGAGAAGCCAAAGACAGCCTGACCCTGCCCTTCCACT TCAGCTCGGAAAAGCAGCAGGCTCTGCTGCGCCCAGGGCCAGCCCAGGCCACCAGCCGCA TCTTCTATGAGCCGGATGCTTACGACGACCTGGACCAAGAGGACCCAGATGATGACCTAG ATGTCTGAGTGGCCGGGAGATCTGACTGGACTCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGGAGGGGCGCAGTCTCCTGAAGGCACTTATCAAGAAATCTGCACTGCGTGGAGAGC AAGTCCACATCCTGGGCTGTGAAGTGAGCGAAGAAGAGTTTCGTGAAGGTTTTGACTCCG ACGTCAACAGACGGCTGATTTACCATGATCTCTTCAGAGACCCTCTCAACTGGTCAAAGA CTGGGGAAGCTCCTCCTGGGGGGCCCCTGGAAGCCTTGAGAGCCCTGTGCAGGAGGACAG TCCCTGGCCCTGTCACCATTGCTGTGGATTCTCTCAGTTGGCTGCTGCTTCGCTTTCCCT GCACCGCACTCTGCCAGAGCCTGTACGCGCTGAGCCAGCAGGACTCCTCCCGTGGTGACA GCTCCCCAGGAGAGCCGGTGCGTGTGCTAGGCCTGCTGCATGAAGAGCTTCATGGCCCAG GCCCCTTGGGAGCCTTGAGCAGCCTTGCTCAGACCGAGGTGACCCTGAGTGGTACCATGG GCCAGGCCTCGGCCCACATCCTCTATCGGAGGCCCCAGCAACGCCCAGCCCGCCAGACTC AGTGGTTCGCCATCCTTCCTGACTTCAGCCTGGATCTCCAAGGGGGGCCGCCGCTCGAGT CCCAGCCCCACCCGGATCCTCACACTCCCCCGGCGGACCCCACGACTCATTTGACCTTCA ACCTTCACCTGTCCAAGAAAGAGAGAGAAGCCAAAGACAGCCTGACCCTGCCCTTCCACT TCAGCTCGGAAAAGCAGCAGGCTCTGCTGCGCCCAGGGCCAGCCCAGGCCACCAGCCGCA TCTTCTATGAGCCGGATGCTTACGACGACCTGGACCAAGAGGACCCAGATGATGACCTAG ATGTCTGAGTGGCCGGGAGATCTGACTGGACTCTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 533-633, - strand, RNAz p=0.9733 | |
| 735-872, - strand, RNAz p=0.728963 | |
| 755-872, - strand, RNAz p=0.935059 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 533-633, - strand, RNAz p=0.9733 | |
| 735-872, - strand, RNAz p=0.728963 | |
| 755-872, - strand, RNAz p=0.935059 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 133-368, gnl|bosTau2|chr19 (20509007-20509241) | |
| 133-368, gnl|canFam2|chr5 (35216943-35217218) | |
| 133-368, gnl|dasNov1|scaffold_78686 (6742-6462) | |
| 133-368, gnl|echTel1|scaffold_249343 (924-1188) | |
| 133-368, gnl|hg17|chr17 (7098598-7098878) | |
| 133-368, gnl|Hg17|chr17 (7098625-7098859) | |
| 133-368, gnl|loxAfr1|scaffold_43377 (31781-31516) | |
| 133-368, gnl|mm7|chr11 (70056866-70056584) | |
| 133-368, gnl|Mm7|chr11 (70056835-70056601) | |
| 133-368, gnl|monDom2|scaffold_66 (4139500-4139765) | |
| 133-368, gnl|panTro1|chr19_random (44653118-44652838) | |
| 133-368, gnl|rheMac2|chr16 (6984454-6984734) | |
| 133-368, gnl|rn3|chr10 (56833379-56833088) | |
| 533-633, gnl|bosTau2|chr19 (20510909-20511009) | |
| 533-633, gnl|canFam2|chr5 (35218968-35219103) | |
| 533-633, gnl|echTel1|scaffold_249343 (3483-3614) | |
| 533-633, gnl|hg17|chr17 (7102611-7102737) | |
| 533-633, gnl|Hg17|chr17 (7102627-7102727) | |
| 533-633, gnl|loxAfr1|scaffold_43377 (29072-28935) | |
| 533-633, gnl|mm7|chr11 (70051182-70051059) | |
| 533-633, gnl|Mm7|chr11 (70051166-70051066) | |
| 533-633, gnl|monDom2|scaffold_66 (4141415-4141513) | |
| 533-633, gnl|oryCun1|scaffold_203517 (31898-32031) | |
| 533-633, gnl|panTro1|chr19_random (44649079-44648953) | |
| 533-633, gnl|rheMac2|chr16 (6988761-6988887) | |
| 533-633, gnl|rn3|chr10 (56828655-56828531) | |
| 735-872, gnl|bosTau2|chr19 (20511888-20512025) | |
| 735-872, gnl|canFam2|chr5 (35219945-35220062) | |
| 735-872, gnl|dasNov1|scaffold_78686 (3776-3659) | |
| 735-872, gnl|echTel1|scaffold_249343 (4487-4606) | |
| 735-872, gnl|hg17|chr17 (7103610-7103727) | |
| 735-872, gnl|Hg17|chr17 (7103615-7103749) | |
| 735-872, gnl|loxAfr1|scaffold_43377 (28086-27968) | |
| 735-872, gnl|mm7|chr11 (70050120-70050003) | |
| 735-872, gnl|Mm7|chr11 (70050113-70049995) | |
| 735-872, gnl|oryCun1|scaffold_191535 (29338-29458) | |
| 735-872, gnl|panTro1|chr20 (16309389-16309272) | |
| 735-872, gnl|rheMac2|chr16 (6989762-6989879) | |
| 735-872, gnl|rn3|chr10 (56827448-56827331) | |
| 735-872, gnl|tetNig1|chrUn_random (46605592-46605488) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-368, gnl|bosTau2|chr19 (20509007-20509241) | |
| 133-368, gnl|canFam2|chr5 (35216943-35217218) | |
| 133-368, gnl|dasNov1|scaffold_78686 (6742-6462) | |
| 133-368, gnl|echTel1|scaffold_249343 (924-1188) | |
| 133-368, gnl|hg17|chr17 (7098598-7098878) | |
| 133-368, gnl|Hg17|chr17 (7098625-7098859) | |
| 133-368, gnl|loxAfr1|scaffold_43377 (31781-31516) | |
| 133-368, gnl|mm7|chr11 (70056866-70056584) | |
| 133-368, gnl|Mm7|chr11 (70056835-70056601) | |
| 133-368, gnl|monDom2|scaffold_66 (4139500-4139765) | |
| 133-368, gnl|panTro1|chr19_random (44653118-44652838) | |
| 133-368, gnl|rheMac2|chr16 (6984454-6984734) | |
| 133-368, gnl|rn3|chr10 (56833379-56833088) | |
| 533-633, gnl|bosTau2|chr19 (20510909-20511009) | |
| 533-633, gnl|canFam2|chr5 (35218968-35219103) | |
| 533-633, gnl|echTel1|scaffold_249343 (3483-3614) | |
| 533-633, gnl|hg17|chr17 (7102611-7102737) | |
| 533-633, gnl|Hg17|chr17 (7102627-7102727) | |
| 533-633, gnl|loxAfr1|scaffold_43377 (29072-28935) | |
| 533-633, gnl|mm7|chr11 (70051182-70051059) | |
| 533-633, gnl|Mm7|chr11 (70051166-70051066) | |
| 533-633, gnl|monDom2|scaffold_66 (4141415-4141513) | |
| 533-633, gnl|oryCun1|scaffold_203517 (31898-32031) | |
| 533-633, gnl|panTro1|chr19_random (44649079-44648953) | |
| 533-633, gnl|rheMac2|chr16 (6988761-6988887) | |
| 533-633, gnl|rn3|chr10 (56828655-56828531) | |
| 735-872, gnl|bosTau2|chr19 (20511888-20512025) | |
| 735-872, gnl|canFam2|chr5 (35219945-35220062) | |
| 735-872, gnl|dasNov1|scaffold_78686 (3776-3659) | |
| 735-872, gnl|echTel1|scaffold_249343 (4487-4606) | |
| 735-872, gnl|hg17|chr17 (7103610-7103727) | |
| 735-872, gnl|Hg17|chr17 (7103615-7103749) | |
| 735-872, gnl|loxAfr1|scaffold_43377 (28086-27968) | |
| 735-872, gnl|mm7|chr11 (70050120-70050003) | |
| 735-872, gnl|Mm7|chr11 (70050113-70049995) | |
| 735-872, gnl|oryCun1|scaffold_191535 (29338-29458) | |
| 735-872, gnl|panTro1|chr20 (16309389-16309272) | |
| 735-872, gnl|rheMac2|chr16 (6989762-6989879) | |
| 735-872, gnl|rn3|chr10 (56827448-56827331) | |
| 735-872, gnl|tetNig1|chrUn_random (46605592-46605488) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eje (0.197668) | |
| fhi (0.169578) | |
| cly (0.120642) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.197668) | |
| fhi (0.169578) | |
| cly (0.120642) | |
| cty (0.10408) | |
| jej (0.0989218) |