Ss1.1-reje15b_k8.5.5
|
CCTGCCCCCAACCATGACACACTGCGGCTGCTCATCCAGCATCTTTGCCGGGTGATCGAG
CACGGAGAACAGAACCGCATGTCCGTGCAGAGTGTGGCCATAGTGTTCGGGCCCACGCTG
CTCCGGCCTGAGACGGAGGAAACCAGCATGCCCATGACCATGGTGTTCCAGAACCAGGTG
GTGGAACTCATCCTGCAGCAGTGCGCAGACATCTTCCCGCCGCACTGACCTCGGGCCTCT
ACCCCCACCCCCGCTGCTGGTGCTGCGGCCCTGGGAGTGGGGACGGCGACAGTGGTCCTG
CAAAGAGGCTGAGCGGCTGGACTCTTATCTCTGAGACCTCGGTTCTGAGGGTATGGTGAC
CCCTGGTGGGCAGTTCGCAAAATGTGATTTTTTTTTTTTTCCTCCCCTTGATTTGGCCTG
CTTTAGGGTTAATGGGTTCAGTTCTTTATCACAGCGCCACCTGCTGGGCATTTGCAAGAA
TGCGGGGTGGGGGAGAGTCTTTTCTGGGACAGCCGAGATGCAAGGAGGAATTTGACCAAA
GGGTTTCCTGGCTTCACCGAGGCCTTGACGGAGACCATGTGGGTTCCCTGCCCTGTGCGT
GGCACCGTGCCCATCATGAAGCAGCAATCGACAACTTCCCTGCTGTGGAAAGAGAACTGA
CTGGGGCCACCAGCAGGCAGCTGAACGTGCCTTTCCCCAGGCCTCCCTGCTGATGCTGCC
TGGCCCAGTCACTGGCTGGCTGGGGACCATTTTCATCTCATTTCCTGTTTGGAGTTCTGG
GCCTTGCCCTCCTTGGTTCACGTGTGCTGTGTGCAAGGGGTCTTCCTGGTTGCTCAGTGT
GTACCCTGCACCTGCCATGCACCATTTCTACTCACGATCCCATTTTACAGGTGAGGAAGC
TGAGGCTTACAGAGGCAAAATGACTTGTTCAGAGTCCGGTGGGTGATCGGACTCCCCAGT
TCAGGCTCCTCTCACACCAGAGCACAGCCTCCTGTGAGCATGAAATCAGTTCTTTCAGCT
ACCCCGCAACCCCAGCATGGCTTTATGGGTGAAGCGATGAAACTAAGCTGAAGGCAGAGA
TGGGATCTGCCCCAACTGTTCTCTGAGGGGAGGGGAAATGCAGCCGCAGGAGCTCCGAGG
CCCTCTCGGCGGCGCCCTGGCTCTTAAGTATGCCTACCTGGTGCCCACCTTGCCGTGAAG
AGCTGGGAAAGAGGCCTGCAAGGTAGGAGGAAGGAGATCATGACCTCAGAAAAGAAAGTG
TGGCCCTGGGGTCATCCGTCCCCTTTCCTTCTTGTGCACAAACCACTTCAGTTTATGGTT
CTCGGGCCCCGCCCCACCTACCTGCTCGCATATTCCACAGACCACAATAGCTAATATTTA
TTGACATTTGCACCATAGCAAGCATTTTACTTGGATTGTCTCATTTGTTTCTCACAGCCA
GTATTTATTAGCTGCCCTTCTGGGTCAGGCACTATGCTCTGGGCAGGGGTACCGCACACA
GCCTCCCTGACCCGAGCCCACCCCTGATGCCAGCGGGGCAGGAGGAGAATGCAAACAGAG
GCCTCACACCATGTGTCAGCACCTTGTAAAGTTATAAATCAAGCTAACAACTGTTCAATA
AAATATGTTCCATTCTCCTAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTGCCCCCAACCATGACACACTGCGGCTGCTCATCCAGCATCTTTGCCGGGTGATCGAG
CACGGAGAACAGAACCGCATGTCCGTGCAGAGTGTGGCCATAGTGTTCGGGCCCACGCTG
CTCCGGCCTGAGACGGAGGAAACCAGCATGCCCATGACCATGGTGTTCCAGAACCAGGTG
GTGGAACTCATCCTGCAGCAGTGCGCAGACATCTTCCCGCCGCACTGACCTCGGGCCTCT
ACCCCCACCCCCGCTGCTGGTGCTGCGGCCCTGGGAGTGGGGACGGCGACAGTGGTCCTG
CAAAGAGGCTGAGCGGCTGGACTCTTATCTCTGAGACCTCGGTTCTGAGGGTATGGTGAC
CCCTGGTGGGCAGTTCGCAAAATGTGATTTTTTTTTTTTTCCTCCCCTTGATTTGGCCTG
CTTTAGGGTTAATGGGTTCAGTTCTTTATCACAGCGCCACCTGCTGGGCATTTGCAAGAA
TGCGGGGTGGGGGAGAGTCTTTTCTGGGACAGCCGAGATGCAAGGAGGAATTTGACCAAA
GGGTTTCCTGGCTTCACCGAGGCCTTGACGGAGACCATGTGGGTTCCCTGCCCTGTGCGT
GGCACCGTGCCCATCATGAAGCAGCAATCGACAACTTCCCTGCTGTGGAAAGAGAACTGA
CTGGGGCCACCAGCAGGCAGCTGAACGTGCCTTTCCCCAGGCCTCCCTGCTGATGCTGCC
TGGCCCAGTCACTGGCTGGCTGGGGACCATTTTCATCTCATTTCCTGTTTGGAGTTCTGG
GCCTTGCCCTCCTTGGTTCACGTGTGCTGTGTGCAAGGGGTCTTCCTGGTTGCTCAGTGT
GTACCCTGCACCTGCCATGCACCATTTCTACTCACGATCCCATTTTACAGGTGAGGAAGC
TGAGGCTTACAGAGGCAAAATGACTTGTTCAGAGTCCGGTGGGTGATCGGACTCCCCAGT
TCAGGCTCCTCTCACACCAGAGCACAGCCTCCTGTGAGCATGAAATCAGTTCTTTCAGCT
ACCCCGCAACCCCAGCATGGCTTTATGGGTGAAGCGATGAAACTAAGCTGAAGGCAGAGA
TGGGATCTGCCCCAACTGTTCTCTGAGGGGAGGGGAAATGCAGCCGCAGGAGCTCCGAGG
CCCTCTCGGCGGCGCCCTGGCTCTTAAGTATGCCTACCTGGTGCCCACCTTGCCGTGAAG
AGCTGGGAAAGAGGCCTGCAAGGTAGGAGGAAGGAGATCATGACCTCAGAAAAGAAAGTG
TGGCCCTGGGGTCATCCGTCCCCTTTCCTTCTTGTGCACAAACCACTTCAGTTTATGGTT
CTCGGGCCCCGCCCCACCTACCTGCTCGCATATTCCACAGACCACAATAGCTAATATTTA
TTGACATTTGCACCATAGCAAGCATTTTACTTGGATTGTCTCATTTGTTTCTCACAGCCA
GTATTTATTAGCTGCCCTTCTGGGTCAGGCACTATGCTCTGGGCAGGGGTACCGCACACA
GCCTCCCTGACCCGAGCCCACCCCTGATGCCAGCGGGGCAGGAGGAGAATGCAAACAGAG
GCCTCACACCATGTGTCAGCACCTTGTAAAGTTATAAATCAAGCTAACAACTGTTCAATA
AAATATGTTCCATTCTCCTAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
35-302, gnl|bosTau2|chr19 (36942920-36943179) |
|
35-302, gnl|Hg17|chr17 (40828798-40828558) |
| |
|
410-1070, gnl|bosTau2|chr19 (36943493-36944173) |
|
410-1070, gnl|canFam2|chr9 (21512451-21511925) |
|
410-1070, gnl|hg17|chr17 (40827688-40828273) |
|
410-1070, gnl|Hg17|chr17 (40828375-40827698) |
|
410-1070, gnl|loxAfr1|scaffold_62640 (1239-1824) |
|
410-1070, gnl|mm7|chr11 (103441153-103441633) |
|
410-1070, gnl|panTro1|chr19 (44125432-44126017) |
|
410-1070, gnl|rheMac2|chr16 (55493241-55493810) |
|
410-1070, gnl|rn3|chr10 (92536135-92536634) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
35-302, gnl|bosTau2|chr19 (36942920-36943179) |
|
35-302, gnl|Hg17|chr17 (40828798-40828558) |
| |
|
410-1070, gnl|bosTau2|chr19 (36943493-36944173) |
|
410-1070, gnl|canFam2|chr9 (21512451-21511925) |
|
410-1070, gnl|hg17|chr17 (40827688-40828273) |
|
410-1070, gnl|Hg17|chr17 (40828375-40827698) |
|
410-1070, gnl|loxAfr1|scaffold_62640 (1239-1824) |
|
410-1070, gnl|mm7|chr11 (103441153-103441633) |
|
410-1070, gnl|panTro1|chr19 (44125432-44126017) |
|
410-1070, gnl|rheMac2|chr16 (55493241-55493810) |
|
410-1070, gnl|rn3|chr10 (92536135-92536634) |
|
pla (0.267344) |
|
cbl (0.229595) |
|
fli (0.202881) |
|
col (0.195008) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
med (0.116252) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
pla (0.267344) |
|
cbl (0.229595) |
|
fli (0.202881) |
|
col (0.195008) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
cov (0.132153) |
|
med (0.116252) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
eje (0.0988338) |
