Ss1.1-reje15b_n15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGAAATAGCCGAGAAAATGGCACGGTTTCATGGCATGAAGATGCCGTTCAATAAGGAA CCAAAGTGGCTTTTTGGAACAATGGAAAAGTACCTGAACCAAGTACTGAGGATTAAGTTT CCCGGGGAGTCCAAAGCCAAGCCGCTCCGCAGGTTCCTCAGTTACAATCTGCCATTGGAG CTGGAACGCCTGCGGTCGTTACTTGAATCCACTCCATCGCCAGTCGTGTTTTGTCACAAC GACTGTCAGGAAGGCAATATCCTGCTGCTGGAAGGCAGGGAGAACTCCGAGAAGCAGAAA CTCATGCTCATCGACTTCGAGTACAGCAGCTACAACTACAGGGGATTCGACATTGGGAAC CATTTCTGCGAATGGATGTACGACTATAACTACGAGAAGTACCCTTTCTTCAGAGCCAAC ATGCTGAAGTACCCGTCCAGGAAGCAGCAGCTCCATTTTATTTCCAATTACTTGGCCGCA TTCCAACACGAGTCTGAAGACCCCAGCGACGAGGAGAGGTCCGCGATCGAAGAAGGCATG TTGCTTGAGGTCAACAGGTTTGCCCTTGCGTCCCATTTCTTCTGGGGACTTTGGTCCATC GTACAGGCCAAGATTTCATCCATTGAATTTGGGTACATGGAGTACGCCCAAGCCAGGTTC GAGGCCTATTTCGACCAGAAGAGGAAGCTGGGGGTGTGACCTGGGAGGCCTCGTGCCCCT CCCCCCTGGACTGCGTGGGGGCGGCTGAGCCTGCGGGGTCGCTCTGTGCTCCGACTACTG CACCTGCGGCAAGAAGGCTCGGACGTCTCGCCGCCCACACAGATGTGTGCGCGACCAAGC CTGTATTAAATGAAGTAACAATTATTTCCTGTCTTGTGTGCGGCTTCACTAGGACCCTGG CACGAATCGGGAAGCAGAGTCAGAGCACACTAGTGCAGTAGTGCAACAGCTCAGACTCCT CACCCAGAGGAGGCGCTCCTGGGTCGGGCAGACCTGGCAGACGGCAGGAGCGGAGTCGTG CTGCAGGTGCCTCGTCTGCTTGAGGACCGTTCAAGGACTTGAACGAACGTGCAGGCGAAC GCCACTGACCAGGCTCTCCGGGTGTAGACGCCGCTCGCCCCCGCAGGCAGGCGGCGAGGG GCACACAGACTGACGCTGCTCCGCGGCCTTCCGGGGTCCCCCGCAGCTGCTCGCTCTCCT CGGTCGGGGGCGGATGCAGACCGCCGGCGGTGCGGGCGCCACTGCCGCCTGCGCGGGAGG GATGGACGCGGCTCTTCAGCGCTTGTCTCTCTGTTCCGTTATGCGGGCGACTCGCCTCAG CTGGACGCAAGCCCTGCCTGCCCTCCAGCGGGATGTGCTCTATAACCCCGCCTTCGAGGC AGGCAGCGCCCTGGGGCGCGTGGACTCCTGCCCCTGTGCCACCTGCATTCCTTCCGCTTT GTCCTGCTCTCTGCAGCCTCCCCTCCACCTCTGCTCAGCCCGGAGCAGGGGGTCCTGTGA CAGCGCTGGCGGCCCGCCCCGGGACATCAGCCCGCCCCAGGGCCCCTCAGAAGCCTCCCG CTGCCCCTGGCGCTGGGGCCCTGGTGTGCCCGGCAGCCCTGGTGGCCAGCTGTCGCTGCC CTCGCCACTCCCTGAGGTCCCGCACGTGGTCATATGGCAAACGGCAGCCTGGATGTGGAC TGTGGGGTCTGGGTGGGGGGTAACTGTGAAATCCATGTTCCGTGAATGCTCTCCTTTCCT TTTTTTTACTTATTTGAATTGTTTTCTGTGCATACATTTCTGCTACCACAGACTGTACTA TATAAACAATAAAAAAATAAAAGCCCATCCTTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGAAATAGCCGAGAAAATGGCACGGTTTCATGGCATGAAGATGCCGTTCAATAAGGAA CCAAAGTGGCTTTTTGGAACAATGGAAAAGTACCTGAACCAAGTACTGAGGATTAAGTTT CCCGGGGAGTCCAAAGCCAAGCCGCTCCGCAGGTTCCTCAGTTACAATCTGCCATTGGAG CTGGAACGCCTGCGGTCGTTACTTGAATCCACTCCATCGCCAGTCGTGTTTTGTCACAAC GACTGTCAGGAAGGCAATATCCTGCTGCTGGAAGGCAGGGAGAACTCCGAGAAGCAGAAA CTCATGCTCATCGACTTCGAGTACAGCAGCTACAACTACAGGGGATTCGACATTGGGAAC CATTTCTGCGAATGGATGTACGACTATAACTACGAGAAGTACCCTTTCTTCAGAGCCAAC ATGCTGAAGTACCCGTCCAGGAAGCAGCAGCTCCATTTTATTTCCAATTACTTGGCCGCA TTCCAACACGAGTCTGAAGACCCCAGCGACGAGGAGAGGTCCGCGATCGAAGAAGGCATG TTGCTTGAGGTCAACAGGTTTGCCCTTGCGTCCCATTTCTTCTGGGGACTTTGGTCCATC GTACAGGCCAAGATTTCATCCATTGAATTTGGGTACATGGAGTACGCCCAAGCCAGGTTC GAGGCCTATTTCGACCAGAAGAGGAAGCTGGGGGTGTGACCTGGGAGGCCTCGTGCCCCT CCCCCCTGGACTGCGTGGGGGCGGCTGAGCCTGCGGGGTCGCTCTGTGCTCCGACTACTG CACCTGCGGCAAGAAGGCTCGGACGTCTCGCCGCCCACACAGATGTGTGCGCGACCAAGC CTGTATTAAATGAAGTAACAATTATTTCCTGTCTTGTGTGCGGCTTCACTAGGACCCTGG CACGAATCGGGAAGCAGAGTCAGAGCACACTAGTGCAGTAGTGCAACAGCTCAGACTCCT CACCCAGAGGAGGCGCTCCTGGGTCGGGCAGACCTGGCAGACGGCAGGAGCGGAGTCGTG CTGCAGGTGCCTCGTCTGCTTGAGGACCGTTCAAGGACTTGAACGAACGTGCAGGCGAAC GCCACTGACCAGGCTCTCCGGGTGTAGACGCCGCTCGCCCCCGCAGGCAGGCGGCGAGGG GCACACAGACTGACGCTGCTCCGCGGCCTTCCGGGGTCCCCCGCAGCTGCTCGCTCTCCT CGGTCGGGGGCGGATGCAGACCGCCGGCGGTGCGGGCGCCACTGCCGCCTGCGCGGGAGG GATGGACGCGGCTCTTCAGCGCTTGTCTCTCTGTTCCGTTATGCGGGCGACTCGCCTCAG CTGGACGCAAGCCCTGCCTGCCCTCCAGCGGGATGTGCTCTATAACCCCGCCTTCGAGGC AGGCAGCGCCCTGGGGCGCGTGGACTCCTGCCCCTGTGCCACCTGCATTCCTTCCGCTTT GTCCTGCTCTCTGCAGCCTCCCCTCCACCTCTGCTCAGCCCGGAGCAGGGGGTCCTGTGA CAGCGCTGGCGGCCCGCCCCGGGACATCAGCCCGCCCCAGGGCCCCTCAGAAGCCTCCCG CTGCCCCTGGCGCTGGGGCCCTGGTGTGCCCGGCAGCCCTGGTGGCCAGCTGTCGCTGCC CTCGCCACTCCCTGAGGTCCCGCACGTGGTCATATGGCAAACGGCAGCCTGGATGTGGAC TGTGGGGTCTGGGTGGGGGGTAACTGTGAAATCCATGTTCCGTGAATGCTCTCCTTTCCT TTTTTTTACTTATTTGAATTGTTTTCTGTGCATACATTTCTGCTACCACAGACTGTACTA TATAAACAATAAAAAAATAAAAGCCCATCCTTGCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 91-196, gnl|bosTau2|chr29 (39472890-39472995) | |
| 91-196, gnl|canFam2|chr18 (52795098-52794984) | |
| 91-196, gnl|danRer3|chr18 (25344641-25344521) | |
| 91-196, gnl|dasNov1|scaffold_11196 (91566-91436) | |
| 91-196, gnl|echTel1|scaffold_167023 (12529-12412) | |
| 91-196, gnl|fr1|chrUn (208220176-208220298) | |
| 91-196, gnl|galGal2|chr5 (13556006-13556146) | |
| 91-196, gnl|hg17|chr11 (67594210-67594348) | |
| 91-196, gnl|Hg17|chr11 (67594335-67594230) | |
| 91-196, gnl|loxAfr1|scaffold_22212 (26912-27040) | |
| 91-196, gnl|mm7|chr19 (3781292-3781167) | |
| 91-196, gnl|Mm7|chr19 (3781169-3781274) | |
| 91-196, gnl|monDom2|scaffold_226 (443628-443491) | |
| 91-196, gnl|oryCun1|scaffold_161978 (3607-3727) | |
| 91-196, gnl|panTro1|chr9 (68583091-68583230) | |
| 91-196, gnl|rheMac2|chr14 (6651311-6651173) | |
| 91-196, gnl|rn3|chr1 (206564317-206564187) | |
| 91-196, gnl|tetNig1|chrUn_random (86072007-86072123) | |
| 91-196, gnl|xenTro1|scaffold_953 (80243-80369) | |
| 339-450, gnl|bosTau2|chr29 (39475507-39475618) | |
| 339-450, gnl|Hg17|chr11 (67589940-67589829) | |
| 339-450, gnl|Mm7|chr19 (3784683-3784794) | |
| 639-1137, gnl|bosTau2|chr29 (39484485-39484980) | |
| 639-1137, gnl|Hg17|chr11 (67578091-67577562) | |
| 1443-1836, gnl|bosTau2|chr29 (39485205-39485599) | |
| 1443-1836, gnl|Hg17|chr11 (67577283-67576892) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-196, gnl|bosTau2|chr29 (39472890-39472995) | |
| 91-196, gnl|canFam2|chr18 (52795098-52794984) | |
| 91-196, gnl|danRer3|chr18 (25344641-25344521) | |
| 91-196, gnl|dasNov1|scaffold_11196 (91566-91436) | |
| 91-196, gnl|echTel1|scaffold_167023 (12529-12412) | |
| 91-196, gnl|fr1|chrUn (208220176-208220298) | |
| 91-196, gnl|galGal2|chr5 (13556006-13556146) | |
| 91-196, gnl|hg17|chr11 (67594210-67594348) | |
| 91-196, gnl|Hg17|chr11 (67594335-67594230) | |
| 91-196, gnl|loxAfr1|scaffold_22212 (26912-27040) | |
| 91-196, gnl|mm7|chr19 (3781292-3781167) | |
| 91-196, gnl|Mm7|chr19 (3781169-3781274) | |
| 91-196, gnl|monDom2|scaffold_226 (443628-443491) | |
| 91-196, gnl|oryCun1|scaffold_161978 (3607-3727) | |
| 91-196, gnl|panTro1|chr9 (68583091-68583230) | |
| 91-196, gnl|rheMac2|chr14 (6651311-6651173) | |
| 91-196, gnl|rn3|chr1 (206564317-206564187) | |
| 91-196, gnl|tetNig1|chrUn_random (86072007-86072123) | |
| 91-196, gnl|xenTro1|scaffold_953 (80243-80369) | |
| 339-450, gnl|bosTau2|chr29 (39475507-39475618) | |
| 339-450, gnl|Hg17|chr11 (67589940-67589829) | |
| 339-450, gnl|Mm7|chr19 (3784683-3784794) | |
| 639-1137, gnl|bosTau2|chr29 (39484485-39484980) | |
| 639-1137, gnl|Hg17|chr11 (67578091-67577562) | |
| 1443-1836, gnl|bosTau2|chr29 (39485205-39485599) | |
| 1443-1836, gnl|Hg17|chr11 (67577283-67576892) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pla (0.534688) | |
| nco (0.323468) | |
| eje (0.296501) | |
| ute (0.265569) | |
| nep (0.183925) | |
| pty (0.142714) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| nco (0.323468) | |
| eje (0.296501) | |
| ute (0.265569) | |
| nep (0.183925) | |
| pty (0.142714) | |
| jca (0.11396) | |
| jej (0.0989218) |