Non-Coding RNA Search

Ss1.1-reje15b_p17.5.5

Sequence:


               
               TATGGGTGCTGGCTCCCAGCTTGAGGAATCCGGCGCCATCCTCGCCTGGGATTGTGTCGA
ATGAAACAGGGGGCTCTCTCCTGAGCCGACCTGGGCCTCCGCGTTCCAGGGGCACGGGAG
TCTGCGTTGCGTTTAAGGGCTCCCGGAGCCTGTGAGGGAGAGTGGCCGGCTTAGGAGAGC
CGGGGCTGCAGGGGGTTCCGGGGGCGGGGGCGTCTAAGGGCGCAGACGTGCCGTGGCCCG
CCGGGCTTTTCCCAGACGTGGGCCTTCAGGGACCTGGCCGGACTCTCTGCCCCTGGAAGC
GTCCCGAGGCCAGGCCGGGAGGAAGGACTTGGCTTGGGTTTGTCCCACTCACTCTGAGCC
TCCTTGTCGCCTGGGTCTAGATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCC
GGTCCGCCATCAACGAGGTGGTAACCAGGGAGTACACGATCAACATTCACAAGCGCATCC
ATGGCGTGGGTTTTAAGAAGCGTGCCCCTCGGGCACTCAAAGAAATCCGTAAATTTGCCA
TGAAGGAGATGGGAACTCCGGATGTGCGCATCGACACCAGGCTCAACAAAGCCGTCTGGG
CCAAAGGAATAAGGAATGTCCCATACCGAATCCGTGTGCGGTTGTCCAGAAAACGTAATG
AAGATGAAGACTCGCCAAACAAGCTCTATACATTGGTCACCTATGTACCTGTCACCACTT
TCAAAAATCTACAGACAGTTAACGTGGATGAGAACTAACTGCTGATTGTCAAATAAAAGT
TGGTTATAGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGGGTGCTGGCTCCCAGCTTGAGGAATCCGGCGCCATCCTCGCCTGGGATTGTGTCGA
ATGAAACAGGGGGCTCTCTCCTGAGCCGACCTGGGCCTCCGCGTTCCAGGGGCACGGGAG
TCTGCGTTGCGTTTAAGGGCTCCCGGAGCCTGTGAGGGAGAGTGGCCGGCTTAGGAGAGC
CGGGGCTGCAGGGGGTTCCGGGGGCGGGGGCGTCTAAGGGCGCAGACGTGCCGTGGCCCG
CCGGGCTTTTCCCAGACGTGGGCCTTCAGGGACCTGGCCGGACTCTCTGCCCCTGGAAGC
GTCCCGAGGCCAGGCCGGGAGGAAGGACTTGGCTTGGGTTTGTCCCACTCACTCTGAGCC
TCCTTGTCGCCTGGGTCTAGATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCC
GGTCCGCCATCAACGAGGTGGTAACCAGGGAGTACACGATCAACATTCACAAGCGCATCC
ATGGCGTGGGTTTTAAGAAGCGTGCCCCTCGGGCACTCAAAGAAATCCGTAAATTTGCCA
TGAAGGAGATGGGAACTCCGGATGTGCGCATCGACACCAGGCTCAACAAAGCCGTCTGGG
CCAAAGGAATAAGGAATGTCCCATACCGAATCCGTGTGCGGTTGTCCAGAAAACGTAATG
AAGATGAAGACTCGCCAAACAAGCTCTATACATTGGTCACCTATGTACCTGTCACCACTT
TCAAAAATCTACAGACAGTTAACGTGGATGAGAACTAACTGCTGATTGTCAAATAAAAGT
TGGTTATAGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5M9K9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5M9K9_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               289-825, gnl|bosTau2|chr14 (2794468-2794982)
               

               
               289-825, gnl|Hg17|chr19 (42084485-42084925)
               

               
               289-825, gnl|Mm7|chr15 (90847569-90847095)
               


               
               381-807, gnl|bosTau2|chr11 (39497667-39498082)
               

               
               381-807, gnl|Hg17|chr7 (121468536-121468959)
               

               
               381-807, gnl|Mm7|chr1 (129684853-129684430)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-825, gnl|bosTau2|chr14 (2794468-2794982)
               

               
               289-825, gnl|Hg17|chr19 (42084485-42084925)
               

               
               289-825, gnl|Mm7|chr15 (90847569-90847095)
               


               
               381-807, gnl|bosTau2|chr11 (39497667-39498082)
               

               
               381-807, gnl|Hg17|chr7 (121468536-121468959)
               

               
               381-807, gnl|Mm7|chr1 (129684853-129684430)

Expressed library(ies): 71 entry(ies)

More info

Expressed library(ies): 71 entry(ies)

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               mcp (3.75427)
               

               
               eje (3.06385)
               

               
               nca (2.6006)
               

               
               lnt (2.13462)
               

               
               cag (2.11672)
               

               
               pty (1.998)
               

               
               fty (1.93424)
               

               
               eru (1.92077)
               

               
               duo (1.90081)
               

               
               ese (1.89753)
               

               
               nep (1.65532)
               

               
               med (1.62753)
               

               
               nco (1.61734)
               

               
               cly (1.56834)
               

               
               rec (1.38456)
               

               
               ecc (1.26539)
               

               
               jca (1.25356)
               

               
               ton (1.2285)
               

               
               elu (1.15607)
               

               
               nbm (1.09257)
               

               
               cli (1.06968)
               

               
               ebs (1.06471)
               

               
               eye (1.02302)
               

               
               jej (0.989218)
               

               
               hlv (0.974795)
               

               
               csp (0.967118)
               

               
               nmm (0.929615)
               

               
               sag (0.913576)
               

               
               eli (0.910885)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               cga (0.837287)
               

               
               amn (0.835422)
               

               
               cov (0.792917)
               

               
               col (0.780031)
               

               
               ill (0.702371)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               nje (0.66368)
               

               
               mga (0.64082)
               

               
               eep (0.61282)
               

               
               fli (0.608643)
               

               
               fcc (0.593354)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               mgm (0.541028)
               

               
               pro (0.512033)
               

               
               clu (0.478583)
               

               
               mgp (0.461361)
               

               
               mas (0.42061)
               

               
               tes (0.415628)
               

               
               ute (0.398353)
               

               
               cje (0.330469)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 71 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (3.75427)
               

               
               eje (3.06385)
               

               
               nca (2.6006)
               

               
               lnt (2.13462)
               

               
               cag (2.11672)
               

               
               pty (1.998)
               

               
               fty (1.93424)
               

               
               eru (1.92077)
               

               
               duo (1.90081)
               

               
               ese (1.89753)
               

               
               nep (1.65532)
               

               
               med (1.62753)
               

               
               nco (1.61734)
               

               
               cly (1.56834)
               

               
               rec (1.38456)
               

               
               ecc (1.26539)
               

               
               jca (1.25356)
               

               
               ton (1.2285)
               

               
               elu (1.15607)
               

               
               nbm (1.09257)
               

               
               cli (1.06968)
               

               
               ebs (1.06471)
               

               
               eye (1.02302)
               

               
               jej (0.989218)
               

               
               hlv (0.974795)
               

               
               csp (0.967118)
               

               
               nmm (0.929615)
               

               
               sag (0.913576)
               

               
               eli (0.910885)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               cga (0.837287)
               

               
               amn (0.835422)
               

               
               cov (0.792917)
               

               
               col (0.780031)
               

               
               ill (0.702371)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               nje (0.66368)
               

               
               mga (0.64082)
               

               
               eep (0.61282)
               

               
               fli (0.608643)
               

               
               fcc (0.593354)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               mgm (0.541028)
               

               
               pro (0.512033)
               

               
               clu (0.478583)
               

               
               mgp (0.461361)
               

               
               mas (0.42061)
               

               
               tes (0.415628)
               

               
               ute (0.398353)
               

               
               cje (0.330469)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	289-825, gnl\|bosTau2\|chr14 (2794468-2794982)
	289-825, gnl\|Hg17\|chr19 (42084485-42084925)
	289-825, gnl\|Mm7\|chr15 (90847569-90847095)

	381-807, gnl\|bosTau2\|chr11 (39497667-39498082)
	381-807, gnl\|Hg17\|chr7 (121468536-121468959)
	381-807, gnl\|Mm7\|chr1 (129684853-129684430)

	mcp (3.75427)
	eje (3.06385)
	nca (2.6006)
	lnt (2.13462)
	cag (2.11672)
	pty (1.998)
	fty (1.93424)
	eru (1.92077)
	duo (1.90081)
	ese (1.89753)
	nep (1.65532)
	med (1.62753)
	nco (1.61734)
	cly (1.56834)
	rec (1.38456)
	ecc (1.26539)
	jca (1.25356)
	ton (1.2285)
	elu (1.15607)
	nbm (1.09257)
	cli (1.06968)
	ebs (1.06471)
	eye (1.02302)
	jej (0.989218)
	hlv (0.974795)
	csp (0.967118)
	nmm (0.929615)
	sag (0.913576)
	eli (0.910885)
	nms (0.855432)
	fhi (0.847889)
	cga (0.837287)
	amn (0.835422)
	cov (0.792917)
	col (0.780031)
	ill (0.702371)
	fbs (0.701385)
	ece (0.687916)
	nje (0.66368)
	mga (0.64082)
	eep (0.61282)
	fli (0.608643)
	fcc (0.593354)
	nlu (0.575043)
	hyp (0.571347)
	fce (0.543183)
	mgm (0.541028)
	pro (0.512033)
	clu (0.478583)
	mgp (0.461361)
	mas (0.42061)
	tes (0.415628)
	ute (0.398353)
	cje (0.330469)
	spc (0.226732)
	aor (0.195274)
	cut (0.169924)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	pgl (0.118483)