Non-Coding RNA Search

Ss1.1-reje16b_c6.5

Sequence:


               
               CCCAGGCCCTACACACGTGGGCCCTCAAGCAATGATTGTTAAATCATCAATAGGTTGGGC
CCCTCATCTTACTGCATCTGGGGCTGCCCTTTCAGAGGAGCCATGGCCAGGTTTGATCCA
TCCAGGCTGGGAGGGGTGCTCCACCATGGGTGTGGATTGCAGGTGAAGCTGGGTGCTGTC
AACTGAAGCTGTGGGAGCAGGTGGAGTGAAGGGCCTGGGGCCAGAGCAGGAGCCTGCCAG
GGGCTGAGAAGAGACAAGCAGAAGCACAGGAAGAAAACCGGGGAGGCTAAGACCTAGGTC
AGTGGGGCAGACACCAGAATCTGTTTTCCTCACTTCTTTCCGGTCCTGGCCACCCTCGCA
GTCAGGTGTGTCTGTGAGTTCCAACTCACGGTACCAGAGCAGAAGGGAGGTTTGCCACTT
CCAGGCTGGCTTATAGAAACTTATCTGGACTTCTCTGCACCCTTACCCCCACCCCCCGCC
CCTGGTGGGAGTGAAGGCAACCCTTTAAAGAGACCTTGGGAGCCATTTATTAAAGATGGC
CCCCTCGTTCTGGTCCCTGGATGACGGTGTGGAGGGGGCAGCCTCATTAACCAGTCCATC
GGCCAGGTACTGAAACCCAGGCCAGAATTGCACTTCTGCTGCATTTGAGCCATTAGACGG
GGGGATCTATTCGTCACAGCCGTAGAACCTGTCCTCATAAAGTCTTTGCCTACCTGGGAG
CACTAGGCCAAACCACATTTCGAGGGAGAGTCCTCCTGTCATCTGAGGGTTATACATTTC
ACTAAAACCAACCAGGCTCTTTGGATGAAGCTAAGAGTTGTCTCTTCCTTGAGTGGGGTT
AGCACTTCTATTTCTTTGGGTCCCCGGGTTGAGCCCAGTACCTTGGAGTTCCTCCCAGCC
CTGGGAGACCATAGTAGGGTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGCCCTACACACGTGGGCCCTCAAGCAATGATTGTTAAATCATCAATAGGTTGGGC
CCCTCATCTTACTGCATCTGGGGCTGCCCTTTCAGAGGAGCCATGGCCAGGTTTGATCCA
TCCAGGCTGGGAGGGGTGCTCCACCATGGGTGTGGATTGCAGGTGAAGCTGGGTGCTGTC
AACTGAAGCTGTGGGAGCAGGTGGAGTGAAGGGCCTGGGGCCAGAGCAGGAGCCTGCCAG
GGGCTGAGAAGAGACAAGCAGAAGCACAGGAAGAAAACCGGGGAGGCTAAGACCTAGGTC
AGTGGGGCAGACACCAGAATCTGTTTTCCTCACTTCTTTCCGGTCCTGGCCACCCTCGCA
GTCAGGTGTGTCTGTGAGTTCCAACTCACGGTACCAGAGCAGAAGGGAGGTTTGCCACTT
CCAGGCTGGCTTATAGAAACTTATCTGGACTTCTCTGCACCCTTACCCCCACCCCCCGCC
CCTGGTGGGAGTGAAGGCAACCCTTTAAAGAGACCTTGGGAGCCATTTATTAAAGATGGC
CCCCTCGTTCTGGTCCCTGGATGACGGTGTGGAGGGGGCAGCCTCATTAACCAGTCCATC
GGCCAGGTACTGAAACCCAGGCCAGAATTGCACTTCTGCTGCATTTGAGCCATTAGACGG
GGGGATCTATTCGTCACAGCCGTAGAACCTGTCCTCATAAAGTCTTTGCCTACCTGGGAG
CACTAGGCCAAACCACATTTCGAGGGAGAGTCCTCCTGTCATCTGAGGGTTATACATTTC
ACTAAAACCAACCAGGCTCTTTGGATGAAGCTAAGAGTTGTCTCTTCCTTGAGTGGGGTT
AGCACTTCTATTTCTTTGGGTCCCCGGGTTGAGCCCAGTACCTTGGAGTTCCTCCCAGCC
CTGGGAGACCATAGTAGGGTCACC

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               189-340, gnl|bosTau2|chr28 (19436474-19436636)
               


               
               487-924, gnl|bosTau2|chr28 (19436764-19437219)
               

               
               487-924, gnl|canFam2|chr4 (24315980-24316428)
               

               
               487-924, gnl|dasNov1|scaffold_37154 (4118-4545)
               

               
               487-924, gnl|hg17|chr10 (71565510-71565968)
               

               
               487-924, gnl|Hg17|chr10 (71566100-71565661)
               

               
               487-924, gnl|oryCun1|scaffold_173342 (37516-37083)
               

               
               487-924, gnl|panTro1|chr8 (72734108-72734567)
               

               
               487-924, gnl|rheMac2|chr9 (66878516-66878062)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-340, gnl|bosTau2|chr28 (19436474-19436636)
               


               
               487-924, gnl|bosTau2|chr28 (19436764-19437219)
               

               
               487-924, gnl|canFam2|chr4 (24315980-24316428)
               

               
               487-924, gnl|dasNov1|scaffold_37154 (4118-4545)
               

               
               487-924, gnl|hg17|chr10 (71565510-71565968)
               

               
               487-924, gnl|Hg17|chr10 (71566100-71565661)
               

               
               487-924, gnl|oryCun1|scaffold_173342 (37516-37083)
               

               
               487-924, gnl|panTro1|chr8 (72734108-72734567)
               

               
               487-924, gnl|rheMac2|chr9 (66878516-66878062)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eje (0.0988338)

	189-340, gnl\|bosTau2\|chr28 (19436474-19436636)

	487-924, gnl\|bosTau2\|chr28 (19436764-19437219)
	487-924, gnl\|canFam2\|chr4 (24315980-24316428)
	487-924, gnl\|dasNov1\|scaffold_37154 (4118-4545)
	487-924, gnl\|hg17\|chr10 (71565510-71565968)
	487-924, gnl\|Hg17\|chr10 (71566100-71565661)
	487-924, gnl\|oryCun1\|scaffold_173342 (37516-37083)
	487-924, gnl\|panTro1\|chr8 (72734108-72734567)
	487-924, gnl\|rheMac2\|chr9 (66878516-66878062)