Ss1.1-reje17b_p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACACACCCGAGGAAGTTCGGCTGGACCCGTCCGATGCCATGTTTGTGGATGTGATTC ACACGGACTCTGCTCCCTTCATCCCTTTCCTAGGTTTCGGAATGAGCCAAAAGGTGGGCC ATCTGGATTTCTACCCAAATGGAGGAAAGGAAATGCCTGGATGTCAGAAAAATACCCTGT CAACCATCGTTGATGTAAATGGAATATGGGAAGGCATCGAAGACTTTGCAGCTTGCAATC ACCTGAGAAGCTACAAGTATTACTCAAGCAGTATCTTCAGCCCCGATGGCTTCCTAGGCT ACCCATGTGCCTCCTACGATGAGTTCCAGGAGGAGGAGAATAAATGTTTTCCTTGTCCAG CTGAAGGATGCCCCAAAATGGGGCACTATGCTGACCAATTTCAGGGGAAAACCAGTGCCG TGGGACAAACGTTTTTCCTGAACACAGGAGACAGTGGTAACTTTACTCGTTGGAGATACA GGGTATCTGTCACCCTGGCTGGAAAAAGGAACTTGCATGGATACATCAGGATTGCTTTGT ATGGAAGTAATGCAAACTCAAAACAGTATAATATTTTCAAGGGTTCCCTCCAACCAAATG CAAGATATACACATGACATCGATGTGGACCTCAATGTTGGAAAAGTCCAGAAGGTCAAGT TCCTCTGGTACAACCATATAATAGACTTATTCCACCCCGAACTGGGGGCTTCCCAAGTGA TGGTGCAAAGTGGTGAAGACAAGACTGAGCATAAGTTTTGCGGCAGCGACACGGTGCGAG AGAACATTTTACAAACCCTCAACCCCTGTTAAAAATGAGGTGTCCTCCTCATCTTTGAGG TAATAAATTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACACACCCGAGGAAGTTCGGCTGGACCCGTCCGATGCCATGTTTGTGGATGTGATTC ACACGGACTCTGCTCCCTTCATCCCTTTCCTAGGTTTCGGAATGAGCCAAAAGGTGGGCC ATCTGGATTTCTACCCAAATGGAGGAAAGGAAATGCCTGGATGTCAGAAAAATACCCTGT CAACCATCGTTGATGTAAATGGAATATGGGAAGGCATCGAAGACTTTGCAGCTTGCAATC ACCTGAGAAGCTACAAGTATTACTCAAGCAGTATCTTCAGCCCCGATGGCTTCCTAGGCT ACCCATGTGCCTCCTACGATGAGTTCCAGGAGGAGGAGAATAAATGTTTTCCTTGTCCAG CTGAAGGATGCCCCAAAATGGGGCACTATGCTGACCAATTTCAGGGGAAAACCAGTGCCG TGGGACAAACGTTTTTCCTGAACACAGGAGACAGTGGTAACTTTACTCGTTGGAGATACA GGGTATCTGTCACCCTGGCTGGAAAAAGGAACTTGCATGGATACATCAGGATTGCTTTGT ATGGAAGTAATGCAAACTCAAAACAGTATAATATTTTCAAGGGTTCCCTCCAACCAAATG CAAGATATACACATGACATCGATGTGGACCTCAATGTTGGAAAAGTCCAGAAGGTCAAGT TCCTCTGGTACAACCATATAATAGACTTATTCCACCCCGAACTGGGGGCTTCCCAAGTGA TGGTGCAAAGTGGTGAAGACAAGACTGAGCATAAGTTTTGCGGCAGCGACACGGTGCGAG AGAACATTTTACAAACCCTCAACCCCTGTTAAAAATGAGGTGTCCTCCTCATCTTTGAGG TAATAAATTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 92-466, - strand, RNAz p=0.975723 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 92-466, - strand, RNAz p=0.975723 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 92-214, gnl|bosTau2|chr26 (23868360-23868482) | |
| 92-214, gnl|canFam2|chr28 (30202615-30202724) | |
| 92-214, gnl|dasNov1|scaffold_13491 (38532-38641) | |
| 92-214, gnl|echTel1|scaffold_305584 (75835-75933) | |
| 92-214, gnl|galGal2|chr6 (27904921-27905029) | |
| 92-214, gnl|hg17|chr10 (118380714-118380823) | |
| 92-214, gnl|Hg17|chr10 (118380737-118380859) | |
| 92-214, gnl|loxAfr1|scaffold_198 (105207-105098) | |
| 92-214, gnl|mm7|chr19 (58688455-58688564) | |
| 92-214, gnl|Mm7|chr19 (58688478-58688600) | |
| 92-214, gnl|monDom2|scaffold_14 (44717358-44717249) | |
| 92-214, gnl|oryCun1|scaffold_214643 (128266-128377) | |
| 92-214, gnl|panTro1|chr8 (120566028-120566137) | |
| 92-214, gnl|rheMac2|chr9 (116261293-116261402) | |
| 92-214, gnl|rn3|chr1 (265485995-265486096) | |
| 345-466, gnl|bosTau2|chr26 (23871497-23871618) | |
| 345-466, gnl|canFam2|chr28 (30207900-30208079) | |
| 345-466, gnl|canFam2|chr28 (30207912-30208041) | |
| 345-466, gnl|dasNov1|scaffold_13491 (11728-11906) | |
| 345-466, gnl|dasNov1|scaffold_13491 (11744-11866) | |
| 345-466, gnl|echTel1|scaffold_305584 (81350-81527) | |
| 345-466, gnl|echTel1|scaffold_305584 (81362-81490) | |
| 345-466, gnl|galGal2|chr6 (27907616-27907797) | |
| 345-466, gnl|hg17|chr10 (118386270-118386453) | |
| 345-466, gnl|Hg17|chr10 (118386292-118386413) | |
| 345-466, gnl|hg17|chrX (107432956-107433086) | |
| 345-466, gnl|loxAfr1|scaffold_198 (97603-97407) | |
| 345-466, gnl|loxAfr1|scaffold_198 (97568-97446) | |
| 345-466, gnl|mm7|chr19 (58693540-58693716) | |
| 345-466, gnl|mm7|chr19 (58693552-58693681) | |
| 345-466, gnl|Mm7|chr19 (58693558-58693679) | |
| 345-466, gnl|monDom2|scaffold_14 (44705461-44705281) | |
| 345-466, gnl|monDom2|scaffold_14 (44705445-44705315) | |
| 345-466, gnl|oryCun1|scaffold_134517 (1206-1022) | |
| 345-466, gnl|oryCun1|scaffold_214643 (104561-104689) | |
| 345-466, gnl|panTro1|chr8 (120572193-120572372) | |
| 345-466, gnl|panTro1|chr8 (120572213-120572336) | |
| 345-466, gnl|rheMac2|chr9 (116266568-116266751) | |
| 345-466, gnl|rheMac2|chrX (107119130-107119260) | |
| 345-466, gnl|rn3|chr1 (265490594-265490770) | |
| 345-466, gnl|rn3|chr1 (265490606-265490736) | |
| 571-749, gnl|bosTau2|chr26 (23874253-23874431) | |
| 571-749, gnl|canFam2|chr28 (30180893-30181006) | |
| 571-749, gnl|dasNov1|scaffold_13491 (43888-44001) | |
| 571-749, gnl|echTel1|scaffold_289540 (43213-43326) | |
| 571-749, gnl|fr1|chrUn (311749249-311749136) | |
| 571-749, gnl|hg17|chr10 (118354929-118355042) | |
| 571-749, gnl|Hg17|chr10 (118391606-118391784) | |
| 571-749, gnl|loxAfr1|scaffold_198 (127606-127493) | |
| 571-749, gnl|mm7|chr19 (58663348-58663461) | |
| 571-749, gnl|Mm7|chr19 (58697346-58697524) | |
| 571-749, gnl|monDom2|scaffold_14 (44777498-44777388) | |
| 571-749, gnl|oryCun1|scaffold_214643 (107285-107398) | |
| 571-749, gnl|rheMac2|chr9 (116235318-116235431) | |
| 571-749, gnl|rn3|chr1 (265461418-265461531) | |
| 571-749, gnl|xenTro1|scaffold_1821 (48088-48201) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-214, gnl|bosTau2|chr26 (23868360-23868482) | |
| 92-214, gnl|canFam2|chr28 (30202615-30202724) | |
| 92-214, gnl|dasNov1|scaffold_13491 (38532-38641) | |
| 92-214, gnl|echTel1|scaffold_305584 (75835-75933) | |
| 92-214, gnl|galGal2|chr6 (27904921-27905029) | |
| 92-214, gnl|hg17|chr10 (118380714-118380823) | |
| 92-214, gnl|Hg17|chr10 (118380737-118380859) | |
| 92-214, gnl|loxAfr1|scaffold_198 (105207-105098) | |
| 92-214, gnl|mm7|chr19 (58688455-58688564) | |
| 92-214, gnl|Mm7|chr19 (58688478-58688600) | |
| 92-214, gnl|monDom2|scaffold_14 (44717358-44717249) | |
| 92-214, gnl|oryCun1|scaffold_214643 (128266-128377) | |
| 92-214, gnl|panTro1|chr8 (120566028-120566137) | |
| 92-214, gnl|rheMac2|chr9 (116261293-116261402) | |
| 92-214, gnl|rn3|chr1 (265485995-265486096) | |
| 345-466, gnl|bosTau2|chr26 (23871497-23871618) | |
| 345-466, gnl|canFam2|chr28 (30207900-30208079) | |
| 345-466, gnl|canFam2|chr28 (30207912-30208041) | |
| 345-466, gnl|dasNov1|scaffold_13491 (11728-11906) | |
| 345-466, gnl|dasNov1|scaffold_13491 (11744-11866) | |
| 345-466, gnl|echTel1|scaffold_305584 (81350-81527) | |
| 345-466, gnl|echTel1|scaffold_305584 (81362-81490) | |
| 345-466, gnl|galGal2|chr6 (27907616-27907797) | |
| 345-466, gnl|hg17|chr10 (118386270-118386453) | |
| 345-466, gnl|Hg17|chr10 (118386292-118386413) | |
| 345-466, gnl|hg17|chrX (107432956-107433086) | |
| 345-466, gnl|loxAfr1|scaffold_198 (97603-97407) | |
| 345-466, gnl|loxAfr1|scaffold_198 (97568-97446) | |
| 345-466, gnl|mm7|chr19 (58693540-58693716) | |
| 345-466, gnl|mm7|chr19 (58693552-58693681) | |
| 345-466, gnl|Mm7|chr19 (58693558-58693679) | |
| 345-466, gnl|monDom2|scaffold_14 (44705461-44705281) | |
| 345-466, gnl|monDom2|scaffold_14 (44705445-44705315) | |
| 345-466, gnl|oryCun1|scaffold_134517 (1206-1022) | |
| 345-466, gnl|oryCun1|scaffold_214643 (104561-104689) | |
| 345-466, gnl|panTro1|chr8 (120572193-120572372) | |
| 345-466, gnl|panTro1|chr8 (120572213-120572336) | |
| 345-466, gnl|rheMac2|chr9 (116266568-116266751) | |
| 345-466, gnl|rheMac2|chrX (107119130-107119260) | |
| 345-466, gnl|rn3|chr1 (265490594-265490770) | |
| 345-466, gnl|rn3|chr1 (265490606-265490736) | |
| 571-749, gnl|bosTau2|chr26 (23874253-23874431) | |
| 571-749, gnl|canFam2|chr28 (30180893-30181006) | |
| 571-749, gnl|dasNov1|scaffold_13491 (43888-44001) | |
| 571-749, gnl|echTel1|scaffold_289540 (43213-43326) | |
| 571-749, gnl|fr1|chrUn (311749249-311749136) | |
| 571-749, gnl|hg17|chr10 (118354929-118355042) | |
| 571-749, gnl|Hg17|chr10 (118391606-118391784) | |
| 571-749, gnl|loxAfr1|scaffold_198 (127606-127493) | |
| 571-749, gnl|mm7|chr19 (58663348-58663461) | |
| 571-749, gnl|Mm7|chr19 (58697346-58697524) | |
| 571-749, gnl|monDom2|scaffold_14 (44777498-44777388) | |
| 571-749, gnl|oryCun1|scaffold_214643 (107285-107398) | |
| 571-749, gnl|rheMac2|chr9 (116235318-116235431) | |
| 571-749, gnl|rn3|chr1 (265461418-265461531) | |
| 571-749, gnl|xenTro1|scaffold_1821 (48088-48201) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pan (0.23596) | |
| ece (0.229305) | |
| jej (0.197844) | |
| sin (0.174948) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) | |
| ece (0.229305) | |
| jej (0.197844) | |
| sin (0.174948) | |
| eje (0.0988338) |