Ss1.1-reje18b_n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCTCCCAAGGATGTGCTGTACATTTACTCAAAAGAAAAAAAATTACTTTGCGGAGCT TCTTCAAAAGGACTCTTGGTGCAGCAGATTCAATCGGGACTCATTTTCCAGCTGTCACTG CATCAAGCTCCAGAGGAGTGACCAGACTCATGATTAGGGTATAGTGGGGCCCTCAAGACG CCTTCAGTTTTGAATGTATTTGCTGCTGAGGAGTCAGTGAAGTTGTTAATTCTGCACATC CCTTCTCCCACCCCCATAAATGCATGGGAAGCCACAGTTCTGGTTTTGAGATACTAGGGC AGCTCAGTACCCCTTCCCCTCATCCTGCATGTCTTGTTACTGGGTCTCCCTGTGTCATTG TGGTATTATTCCACAACCATCATGTTATTTAGGTGCCAAACATATACAGAAATAAGTCTC CATACATCTTAGGGTCAGAAAGGGACAGATTCAGAAGGACCTTGCTTGCCAGGAAGCCTT GCAAGTTAGTCATGTGAGGGCATGCTTCGGCCTCTGGGTGTTGGGTGGGAAAAGGGCCAA GAGCCTGAAAAGGAGGGAGGAGAGGTAGAAGTGAGTTTGTAGGGCTTGGATGATTAGCAG CAGCCTAGTGTGGTGCCCCATCGTCAACACAACCCGGTGGTCCTTCTGGGTGCCTGCCAA GCTTGGGTGTGTACAAAAGCAAGGTGGGTATCTATTTTTGTATATGAGCTACATCACGCT TTCCTGTGGGCCAGTATTGTGGAGTGAGTCTGAGTTGTTTACACTGATACCTTCCCTGCC CACCACAAATTGTGTACATAGTCTCCAGATGATAACCACCCCTTTCCCAGCTCCCAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCTCCCAAGGATGTGCTGTACATTTACTCAAAAGAAAAAAAATTACTTTGCGGAGCT TCTTCAAAAGGACTCTTGGTGCAGCAGATTCAATCGGGACTCATTTTCCAGCTGTCACTG CATCAAGCTCCAGAGGAGTGACCAGACTCATGATTAGGGTATAGTGGGGCCCTCAAGACG CCTTCAGTTTTGAATGTATTTGCTGCTGAGGAGTCAGTGAAGTTGTTAATTCTGCACATC CCTTCTCCCACCCCCATAAATGCATGGGAAGCCACAGTTCTGGTTTTGAGATACTAGGGC AGCTCAGTACCCCTTCCCCTCATCCTGCATGTCTTGTTACTGGGTCTCCCTGTGTCATTG TGGTATTATTCCACAACCATCATGTTATTTAGGTGCCAAACATATACAGAAATAAGTCTC CATACATCTTAGGGTCAGAAAGGGACAGATTCAGAAGGACCTTGCTTGCCAGGAAGCCTT GCAAGTTAGTCATGTGAGGGCATGCTTCGGCCTCTGGGTGTTGGGTGGGAAAAGGGCCAA GAGCCTGAAAAGGAGGGAGGAGAGGTAGAAGTGAGTTTGTAGGGCTTGGATGATTAGCAG CAGCCTAGTGTGGTGCCCCATCGTCAACACAACCCGGTGGTCCTTCTGGGTGCCTGCCAA GCTTGGGTGTGTACAAAAGCAAGGTGGGTATCTATTTTTGTATATGAGCTACATCACGCT TTCCTGTGGGCCAGTATTGTGGAGTGAGTCTGAGTTGTTTACACTGATACCTTCCCTGCC CACCACAAATTGTGTACATAGTCTCCAGATGATAACCACCCCTTTCCCAGCTCCCAACCA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 41-155, - strand, RNAz p=0.927561 | |
| 63-177, + strand, RNAz p=0.549856 | |
| 273-388, - strand, RNAz p=0.720084 | |
| 728-838, - strand, RNAz p=0.63799 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-155, - strand, RNAz p=0.927561 | |
| 63-177, + strand, RNAz p=0.549856 | |
| 273-388, - strand, RNAz p=0.720084 | |
| 728-838, - strand, RNAz p=0.63799 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-838, gnl|bosTau2|chr22 (36828072-36827228) | |
| 1-838, gnl|canFam2|chr20 (40507651-40506899) | |
| 1-838, gnl|canFam2|chr20 (40507656-40506904) | |
| 1-838, gnl|dasNov1|scaffold_62316 (5921-6669) | |
| 1-838, gnl|dasNov1|scaffold_62316 (5904-6664) | |
| 1-838, gnl|echTel1|scaffold_284013 (2865-3556) | |
| 1-838, gnl|echTel1|scaffold_284013 (2872-3553) | |
| 1-838, gnl|hg17|chr1 (91711148-91711898) | |
| 1-838, gnl|hg17|chr3 (52265424-52266190) | |
| 1-838, gnl|Hg17|chr3 (52266426-52265556) | |
| 1-838, gnl|loxAfr1|scaffold_72462 (4623-3859) | |
| 1-838, gnl|loxAfr1|scaffold_72462 (4628-3864) | |
| 1-838, gnl|mm7|chr9 (105919176-105918419) | |
| 1-838, gnl|mm7|chr9 (105919179-105918425) | |
| 1-838, gnl|Mm7|chr9 (105918192-105919060) | |
| 1-838, gnl|monDom2|scaffold_5 (71006303-71005483) | |
| 1-838, gnl|monDom2|scaffold_5 (71006308-71005488) | |
| 1-838, gnl|oryCun1|scaffold_196786 (8884-8188) | |
| 1-838, gnl|oryCun1|scaffold_196786 (8887-8193) | |
| 1-838, gnl|panTro1|chr1 (90487389-90488139) | |
| 1-838, gnl|panTro1|chr2 (53879439-53880208) | |
| 1-838, gnl|rheMac2|chr1 (94532535-94533286) | |
| 1-838, gnl|rheMac2|chr2 (84137508-84136766) | |
| 1-838, gnl|rn3|chr14 (48548868-48548145) | |
| 1-838, gnl|rn3|chr14 (48548871-48548151) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-838, gnl|bosTau2|chr22 (36828072-36827228) | |
| 1-838, gnl|canFam2|chr20 (40507651-40506899) | |
| 1-838, gnl|canFam2|chr20 (40507656-40506904) | |
| 1-838, gnl|dasNov1|scaffold_62316 (5921-6669) | |
| 1-838, gnl|dasNov1|scaffold_62316 (5904-6664) | |
| 1-838, gnl|echTel1|scaffold_284013 (2865-3556) | |
| 1-838, gnl|echTel1|scaffold_284013 (2872-3553) | |
| 1-838, gnl|hg17|chr1 (91711148-91711898) | |
| 1-838, gnl|hg17|chr3 (52265424-52266190) | |
| 1-838, gnl|Hg17|chr3 (52266426-52265556) | |
| 1-838, gnl|loxAfr1|scaffold_72462 (4623-3859) | |
| 1-838, gnl|loxAfr1|scaffold_72462 (4628-3864) | |
| 1-838, gnl|mm7|chr9 (105919176-105918419) | |
| 1-838, gnl|mm7|chr9 (105919179-105918425) | |
| 1-838, gnl|Mm7|chr9 (105918192-105919060) | |
| 1-838, gnl|monDom2|scaffold_5 (71006303-71005483) | |
| 1-838, gnl|monDom2|scaffold_5 (71006308-71005488) | |
| 1-838, gnl|oryCun1|scaffold_196786 (8884-8188) | |
| 1-838, gnl|oryCun1|scaffold_196786 (8887-8193) | |
| 1-838, gnl|panTro1|chr1 (90487389-90488139) | |
| 1-838, gnl|panTro1|chr2 (53879439-53880208) | |
| 1-838, gnl|rheMac2|chr1 (94532535-94533286) | |
| 1-838, gnl|rheMac2|chr2 (84137508-84136766) | |
| 1-838, gnl|rn3|chr14 (48548868-48548145) | |
| 1-838, gnl|rn3|chr14 (48548871-48548151) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| csp (0.161186) | |
| eje (0.0988338) |