Non-Coding RNA Search

Ss1.1-reje19b_d2.5

Sequence:


               
               CCCGAACGGCTCCCCGAGCCCCCACTGCGGGGCTGTGTGTCTGTGGACAACCTCATGGGG
CTTGAGGAGCCCTCCTCGGAGGGCCCGGGAAGCAGGGGCTTGAGGCGCTGGCGACAGGAC
CCCCGGGGGGAGAGCTGCTTTTCCCTGATGGACTGCCAGGAGGTGACAGAGGCCCACCAA
CAGGCGCTGGGGGTCTGCACCAGGTTCAGCTGAGGGTGGGGGGCCTCGCCCCATCGGGGC
AGGCTTTAAGATGCAGCTGGCTGCACCCTGAGGGGAAACACCTTCTTCCCTCCTGCCTCC
CAGGACCAGCGTCTCAGCCCCGAAGGCTGAGATGGTCTGCGCTTGAGCCCTGGGGAGAGC
TGATGTGGGAAGCGGGCAGATGAAGTGCATTGAGGGTTCAATGTCTTCAGCCCCGTGGAA
CCAAGCAGATAGTAGGGCCAAAAAAGTAGAGTAGAAGAGGGGAAGGCCTGTGGCCAAGTC
CAGGCTGCATGTTTCTTGTACACACAGTAGGGCCACAGAGATCTGGAAAGAACCCTCTTT
TAGGGCCCAGCTCCCTTCTTGCAACAAGTTACATTTTGTCTATGGTGTCTTCCTGCCAAT
GTGGGGATGGAAATTCCTTCCATAGATGATCCCGCCCCCACCAATCACTGCAACTGGAAC
ACGGCACCCCCTAATGTGCCCAGGGGTGTCCTGGGATGGTCTCTCAAAGTGTGCCCTTCC
TTATTTCTCTGAGCAGTAAGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAACGGCTCCCCGAGCCCCCACTGCGGGGCTGTGTGTCTGTGGACAACCTCATGGGG
CTTGAGGAGCCCTCCTCGGAGGGCCCGGGAAGCAGGGGCTTGAGGCGCTGGCGACAGGAC
CCCCGGGGGGAGAGCTGCTTTTCCCTGATGGACTGCCAGGAGGTGACAGAGGCCCACCAA
CAGGCGCTGGGGGTCTGCACCAGGTTCAGCTGAGGGTGGGGGGCCTCGCCCCATCGGGGC
AGGCTTTAAGATGCAGCTGGCTGCACCCTGAGGGGAAACACCTTCTTCCCTCCTGCCTCC
CAGGACCAGCGTCTCAGCCCCGAAGGCTGAGATGGTCTGCGCTTGAGCCCTGGGGAGAGC
TGATGTGGGAAGCGGGCAGATGAAGTGCATTGAGGGTTCAATGTCTTCAGCCCCGTGGAA
CCAAGCAGATAGTAGGGCCAAAAAAGTAGAGTAGAAGAGGGGAAGGCCTGTGGCCAAGTC
CAGGCTGCATGTTTCTTGTACACACAGTAGGGCCACAGAGATCTGGAAAGAACCCTCTTT
TAGGGCCCAGCTCCCTTCTTGCAACAAGTTACATTTTGTCTATGGTGTCTTCCTGCCAAT
GTGGGGATGGAAATTCCTTCCATAGATGATCCCGCCCCCACCAATCACTGCAACTGGAAC
ACGGCACCCCCTAATGTGCCCAGGGGTGTCCTGGGATGGTCTCTCAAAGTGTGCCCTTCC
TTATTTCTCTGAGCAGTAAGAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-433, + strand, RNAz p=0.999432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-433, + strand, RNAz p=0.999432

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               276-376, - strand, RNAmicro p=0.999211

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-376, - strand, RNAmicro p=0.999211

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030952, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030952, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-493, gnl|bosTau2|chr16 (1157131-1156638)
               

               
               1-493, gnl|Hg17|chr1 (202004444-202003964)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-493, gnl|bosTau2|chr16 (1157131-1156638)
               

               
               1-493, gnl|Hg17|chr1 (202004444-202003964)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eje (0.0988338)

	1-493, gnl\|bosTau2\|chr16 (1157131-1156638)
	1-493, gnl\|Hg17\|chr1 (202004444-202003964)