Non-Coding RNA Search

Ss1.1-reje19b_n10.5

Sequence:


               
               TAAGGAGCTGGAGGAGTACAACCAGATCCTGCTGGACATGGAGACCGCATACAGCGTGGC
CTCTGTGTGCCACGCCAACAGCACTTGTCTTCAGTTGGAGCCTGATCTGACAAACCTGAT
GGCCACATCCCGAAGCTATGAGGAGCTGTTGTGGGCTTGGAAGGGCTGGCGAGACAAGGT
GGGCAGAGCCATCCTCCCTTACTTCCCAAAATACGTGGAGCTCACCAACAAGGCTGCCAG
GCTCAATGGCTACGAAGATGGAGGGGACGCCTGGAGAGCTGCGTATGAGATGCCCTTCCT
GGAGCAGGAGCTGGAGCAGCTCTTCCAGGAGCTGCAGCCACTCTACCTGAACCTACACGC
CTCGTGCGCCGGGCACTGCACCACCACTACGGGCCCGAGCACATCAACCTGGAGGGCCCC
ATCCCAGCCCATCTGCTGGGTAACATGTGGGCTCAGACCTGGTCCAACATCTATGACTTG
GTGGTACCTTTCCCTTCAGCTTCCAAGATGGATGCCTCAGAGGCCATGATAAATCAGGGC
TGGACTCCCCAAAGGATGTTTAAGGAAGCAGACAATTTCTTCACCTCCCTGGGGCTGCTG
CCCGTGCCCCCAGAGTTCTGGAACAAGTCGATGCTGGAGAAGCCAACTGATGGGCGGGAG
GTGGTGTGTCATGCCTCCGCCTGGGACTTCTTCAACGGCAAGGACTTCAGGATCAAGCAG
TGTACCACCGTGAACATGGAGGACCTGGTGGTGGCCCACCACGAAATGGGCCACATTCAG
TATTTCATGCAGTACAAGGACCTGCCTGTGACCTTCCGGGAGGGCGCCAACCCTGGCTTT
CACGAGGCCATTGGGGACGTGCTGGCCCTCTCCGTGTCTACCCCCAAGCACCTGCGCAGC
ATCAACCTGCTGAAGAGCGAGGACGACGGCTATGAGGAGGACATCAACTTCCTGATGAAG
ATGGCGCTCGACAAGGTCGCCTTTGTCCCCTTCAGCTACCTTGTTGACCAGTGGCGCTGG
AGGGTGTTTGACAGAAGCATCACCAAGGAGAACTACAACCAGGAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGAGCTGGAGGAGTACAACCAGATCCTGCTGGACATGGAGACCGCATACAGCGTGGC
CTCTGTGTGCCACGCCAACAGCACTTGTCTTCAGTTGGAGCCTGATCTGACAAACCTGAT
GGCCACATCCCGAAGCTATGAGGAGCTGTTGTGGGCTTGGAAGGGCTGGCGAGACAAGGT
GGGCAGAGCCATCCTCCCTTACTTCCCAAAATACGTGGAGCTCACCAACAAGGCTGCCAG
GCTCAATGGCTACGAAGATGGAGGGGACGCCTGGAGAGCTGCGTATGAGATGCCCTTCCT
GGAGCAGGAGCTGGAGCAGCTCTTCCAGGAGCTGCAGCCACTCTACCTGAACCTACACGC
CTCGTGCGCCGGGCACTGCACCACCACTACGGGCCCGAGCACATCAACCTGGAGGGCCCC
ATCCCAGCCCATCTGCTGGGTAACATGTGGGCTCAGACCTGGTCCAACATCTATGACTTG
GTGGTACCTTTCCCTTCAGCTTCCAAGATGGATGCCTCAGAGGCCATGATAAATCAGGGC
TGGACTCCCCAAAGGATGTTTAAGGAAGCAGACAATTTCTTCACCTCCCTGGGGCTGCTG
CCCGTGCCCCCAGAGTTCTGGAACAAGTCGATGCTGGAGAAGCCAACTGATGGGCGGGAG
GTGGTGTGTCATGCCTCCGCCTGGGACTTCTTCAACGGCAAGGACTTCAGGATCAAGCAG
TGTACCACCGTGAACATGGAGGACCTGGTGGTGGCCCACCACGAAATGGGCCACATTCAG
TATTTCATGCAGTACAAGGACCTGCCTGTGACCTTCCGGGAGGGCGCCAACCCTGGCTTT
CACGAGGCCATTGGGGACGTGCTGGCCCTCTCCGTGTCTACCCCCAAGCACCTGCGCAGC
ATCAACCTGCTGAAGAGCGAGGACGACGGCTATGAGGAGGACATCAACTTCCTGATGAAG
ATGGCGCTCGACAAGGTCGCCTTTGTCCCCTTCAGCTACCTTGTTGACCAGTGGCGCTGG
AGGGTGTTTGACAGAAGCATCACCAAGGAGAACTACAACCAGGAGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               574-693, + strand, RNAz p=0.568646

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-693, + strand, RNAz p=0.568646

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               535-711, gnl|bosTau2|chr19 (40236804-40236980)
               

               
               535-711, gnl|canFam2|chr9 (14636133-14636326)
               

               
               535-711, gnl|danRer3|chr3 (17209784-17209961)
               

               
               535-711, gnl|dasNov1|scaffold_88362 (514-321)
               

               
               535-711, gnl|echTel1|scaffold_320855 (40489-40682)
               

               
               535-711, gnl|fr1|chrUn (192397531-192397340)
               

               
               535-711, gnl|galGal2|chr27 (1121749-1121946)
               

               
               535-711, gnl|hg17|chr17 (58922289-58922482)
               

               
               535-711, gnl|Hg17|chr17 (58922299-58922475)
               

               
               535-711, gnl|loxAfr1|scaffold_29461 (8295-8102)
               

               
               535-711, gnl|mm7|chr11 (106090796-106090989)
               

               
               535-711, gnl|Mm7|chr11 (106090806-106090982)
               

               
               535-711, gnl|monDom2|scaffold_18 (36150833-36150641)
               

               
               535-711, gnl|oryCun1|scaffold_205422 (76947-77140)
               

               
               535-711, gnl|panTro1|chr19 (46215976-46215783)
               

               
               535-711, gnl|rheMac2|chr16 (59011857-59012050)
               

               
               535-711, gnl|rn3|chr10 (95389228-95389421)
               

               
               535-711, gnl|tetNig1|chr2 (4283602-4283413)
               

               
               535-711, gnl|xenTro1|scaffold_127 (232988-232794)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               535-711, gnl|bosTau2|chr19 (40236804-40236980)
               

               
               535-711, gnl|canFam2|chr9 (14636133-14636326)
               

               
               535-711, gnl|danRer3|chr3 (17209784-17209961)
               

               
               535-711, gnl|dasNov1|scaffold_88362 (514-321)
               

               
               535-711, gnl|echTel1|scaffold_320855 (40489-40682)
               

               
               535-711, gnl|fr1|chrUn (192397531-192397340)
               

               
               535-711, gnl|galGal2|chr27 (1121749-1121946)
               

               
               535-711, gnl|hg17|chr17 (58922289-58922482)
               

               
               535-711, gnl|Hg17|chr17 (58922299-58922475)
               

               
               535-711, gnl|loxAfr1|scaffold_29461 (8295-8102)
               

               
               535-711, gnl|mm7|chr11 (106090796-106090989)
               

               
               535-711, gnl|Mm7|chr11 (106090806-106090982)
               

               
               535-711, gnl|monDom2|scaffold_18 (36150833-36150641)
               

               
               535-711, gnl|oryCun1|scaffold_205422 (76947-77140)
               

               
               535-711, gnl|panTro1|chr19 (46215976-46215783)
               

               
               535-711, gnl|rheMac2|chr16 (59011857-59012050)
               

               
               535-711, gnl|rn3|chr10 (95389228-95389421)
               

               
               535-711, gnl|tetNig1|chr2 (4283602-4283413)
               

               
               535-711, gnl|xenTro1|scaffold_127 (232988-232794)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nje (0.33184)
               

               
               eje (0.197668)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               eje (0.197668)
               

               
               jej (0.0989218)

	535-711, gnl\|bosTau2\|chr19 (40236804-40236980)
	535-711, gnl\|canFam2\|chr9 (14636133-14636326)
	535-711, gnl\|danRer3\|chr3 (17209784-17209961)
	535-711, gnl\|dasNov1\|scaffold_88362 (514-321)
	535-711, gnl\|echTel1\|scaffold_320855 (40489-40682)
	535-711, gnl\|fr1\|chrUn (192397531-192397340)
	535-711, gnl\|galGal2\|chr27 (1121749-1121946)
	535-711, gnl\|hg17\|chr17 (58922289-58922482)
	535-711, gnl\|Hg17\|chr17 (58922299-58922475)
	535-711, gnl\|loxAfr1\|scaffold_29461 (8295-8102)
	535-711, gnl\|mm7\|chr11 (106090796-106090989)
	535-711, gnl\|Mm7\|chr11 (106090806-106090982)
	535-711, gnl\|monDom2\|scaffold_18 (36150833-36150641)
	535-711, gnl\|oryCun1\|scaffold_205422 (76947-77140)
	535-711, gnl\|panTro1\|chr19 (46215976-46215783)
	535-711, gnl\|rheMac2\|chr16 (59011857-59012050)
	535-711, gnl\|rn3\|chr10 (95389228-95389421)
	535-711, gnl\|tetNig1\|chr2 (4283602-4283413)
	535-711, gnl\|xenTro1\|scaffold_127 (232988-232794)